JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPHOSPH8_chr13_19628659_19678441	0/0	t0027	1654	1	0	1	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0028	1655	1	0	1	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0029	1654	1	0	0	0	0	1	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0030	1655	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0031	1654	1	0	0	0	0	1	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0032	1657	1	0	0	1	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	t0033	1655	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH9_chr12_123149215_123238141	0/0	t0001	2814	89	2	28	44	3	12	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0002	2813	48	1	5	39	0	3	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0003	2817	35	32	3	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	1/1	t0004	2818	27	3	13	0	2	7	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0005	2816	17	17	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0006	2817	9	0	0	4	0	5	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0007	2813	8	0	1	5	0	2	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0008	2813	4	0	0	2	0	2	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0009	2818	3	3	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0010	2813	3	0	2	0	1	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0011	2813	2	1	1	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0012	2817	2	2	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0013	2814	2	0	0	0	0	2	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0014	2814	1	0	0	0	0	1	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0015	2818	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0016	2814	1	0	1	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0017	2812	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0018	2814	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0019	2814	1	0	0	0	0	1	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0020	2818	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0021	2818	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0022	2817	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0023	2816	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0024	2813	1	0	0	0	0	1	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0025	2813	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0026	2812	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0027	2814	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0028	2817	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0029	2817	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	t0030	2818	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPIG6B_chr6_31718373_31731714	0/1	t0001	1652	351	70	80	149	18	33	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	t0002	1652	18	12	1	5	0	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	t0003	1653	9	2	1	5	0	1	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	t0004	1652	5	2	2	0	0	1	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	t0005	1652	4	0	0	1	0	3	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	t0006	1652	2	0	0	0	0	2	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	t0007	1652	2	0	0	2	0	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	t0008	1652	1	0	0	1	0	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	t0009	1652	1	0	0	1	0	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPI_chr15_74885042_74907219	0/0	t0001	4522	89	0	9	65	3	12	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0002	4522	74	3	8	56	0	7	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	1/0	t0003	4522	70	30	13	7	5	14	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0004	4522	69	4	29	25	6	5	copy fasta	MPI	chr15	74885042	74907219