JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPI_chr15_74885042_74907219	0/0	t0005	4522	14	0	1	12	0	1	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0006	4522	13	0	0	13	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0007	4522	12	11	1	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0008	4520	9	9	0	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0009	4522	8	0	0	8	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0010	4522	8	8	0	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0011	4522	5	5	0	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0012	4522	4	0	0	4	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0013	4522	4	4	0	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0014	4522	3	0	0	3	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0015	4522	3	0	0	0	0	3	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0016	4522	3	0	0	3	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0017	4522	2	0	2	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0018	4522	2	2	0	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0019	4522	2	0	0	0	0	2	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0020	4522	2	2	0	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0021	4522	1	0	0	1	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0022	4522	1	1	0	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0023	4522	1	0	1	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0024	4522	1	0	1	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0025	4522	1	0	1	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0026	4522	1	0	0	1	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0027	4522	1	0	0	1	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0028	4522	1	0	0	1	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0029	4522	1	0	0	1	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0030	4522	1	0	1	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0031	4522	1	0	0	1	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/1	t0032	4522	1	0	0	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0033	4522	1	0	0	0	0	1	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0034	4522	1	0	1	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0035	4522	1	0	0	1	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0036	4522	1	1	0	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0037	4522	1	0	1	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0038	4522	1	0	0	1	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0039	4522	1	1	0	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0040	4522	1	0	0	0	0	1	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0041	4522	1	0	0	0	0	1	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0042	4522	1	0	1	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0043	4520	1	1	0	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0044	4522	1	0	0	0	0	1	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0045	4883	1	0	0	1	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	t0046	4522	1	0	0	1	0	0	copy fasta	MPI	chr15	74885042	74907219
MPLKIP_chr7_40121027_40139622	0/0	t0001	7092	87	7	22	42	3	13	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0002	7088	66	3	7	51	2	3	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0003	7088	45	2	12	16	6	9	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0004	7088	20	5	8	3	3	1	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0005	7090	14	12	1	0	0	1	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0006	7093	11	1	4	4	1	1	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0007	7088	8	0	0	8	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	1/1	t0008	7088	7	0	5	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622