JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPLKIP_chr7_40121027_40139622	0/0	t0009	7079	7	7	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0010	7079	7	7	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0011	7089	6	6	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0012	7091	6	0	0	6	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0013	7092	5	0	5	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0014	7089	4	0	0	3	1	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0015	7090	4	0	0	4	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0016	7101	4	4	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0017	7089	3	0	1	1	0	1	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0018	7088	3	0	0	3	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0019	7090	3	3	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0020	7091	3	3	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0021	7092	3	0	0	3	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0022	7100	3	3	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0023	7087	2	0	1	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0024	7088	2	2	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0025	7087	2	0	0	2	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0026	7087	2	0	0	1	0	1	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0027	7088	2	0	0	2	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0028	7088	2	2	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0029	7093	2	0	0	2	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0030	7092	2	0	0	2	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0031	7092	2	0	2	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0032	7100	2	1	1	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0033	6650	2	2	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0034	7092	1	0	0	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0035	7090	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0036	7088	1	0	0	0	0	1	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0037	7088	1	0	0	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0038	7088	1	0	1	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0039	7074	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0040	7088	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0041	7088	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0042	7088	1	0	1	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0043	7088	1	0	1	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0044	7088	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0045	7088	1	0	0	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0046	7089	1	0	0	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0047	7090	1	0	1	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0048	7088	1	0	0	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0049	7088	1	0	1	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0050	7098	1	0	0	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0051	7092	1	0	0	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0052	7090	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0053	7088	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0054	7088	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0055	7089	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0056	7087	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0057	7088	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0058	7089	1	0	1	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622