JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPLKIP_chr7_40121027_40139622	0/0	t0059	7092	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0060	7093	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0061	7089	1	0	0	0	0	1	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0062	7091	1	0	0	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0063	7088	1	0	0	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0064	7091	1	0	1	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0065	7092	1	0	1	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0066	7092	1	0	0	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0067	7092	1	0	0	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0068	7092	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0069	7092	1	0	0	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0070	7093	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0071	7093	1	0	1	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0072	7088	1	0	1	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0073	7091	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0074	7092	1	0	0	0	0	1	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0075	7088	1	0	0	0	0	1	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0076	7100	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0077	6649	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0078	7092	1	0	0	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0079	7092	1	0	1	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0080	7088	1	0	0	1	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0081	7079	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPLKIP_chr7_40121027_40139622	0/0	t0082	7079	1	1	0	0	0	0	copy fasta	MPLKIP	chr7	40121027	40139622
MPL_chr1_43332818_43359466	1/0	t0001	1726	135	39	32	38	9	16	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0002	1727	55	19	9	18	1	8	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0003	1725	17	3	7	6	0	1	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0004	1730	14	2	3	5	2	2	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/1	t0005	1731	14	2	1	8	0	2	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0006	1728	13	4	1	6	0	2	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0007	1732	12	1	2	4	0	5	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0008	1729	9	1	2	6	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0009	1726	6	0	0	6	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0010	1727	5	4	1	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0011	1713	3	3	0	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0012	1714	3	3	0	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0013	1728	3	3	0	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0014	1730	3	3	0	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0015	1726	2	0	0	2	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0016	1729	2	2	0	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0017	1728	2	1	1	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0018	1727	1	0	0	1	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0019	1727	1	0	0	1	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0020	1728	1	0	0	1	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0021	1726	1	0	1	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0022	1726	1	1	0	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0023	1726	1	1	0	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0024	1727	1	1	0	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0025	1727	1	0	0	1	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	t0026	1728	1	1	0	0	0	0	copy fasta	MPL	chr1	43332818	43359466