JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPL_chr1_43332818_43359466	0/0	t0027	1730	1	0	0	1	0	0	copy fasta	MPL	chr1	43332818	43359466
MPND_chr19_4338562_4365078	0/0	t0001	109	420	98	82	175	18	47	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	t0002	109	1	0	0	0	0	1	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	t0003	109	1	0	0	1	0	0	copy fasta	MPND	chr19	4338562	4365078
MPO_chr17_58264855_58285935	1/1	t0001	979	317	69	64	135	16	31	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	t0002	979	33	25	4	4	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	t0003	979	1	1	0	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	t0004	979	1	0	0	1	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	t0005	979	1	1	0	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	t0006	979	1	0	0	1	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	t0007	979	1	0	0	1	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	t0008	979	1	0	0	0	0	1	copy fasta	MPO	chr17	58264855	58285935
MPP1_chrX_154773684_154810485	1/1	t0001	606	258	68	53	100	9	26	copy fasta	MPP1	chrX	154773684	154810485
MPP1_chrX_154773684_154810485	0/0	t0002	606	2	0	0	0	0	2	copy fasta	MPP1	chrX	154773684	154810485
MPP1_chrX_154773684_154810485	0/0	t0003	605	1	0	0	1	0	0	copy fasta	MPP1	chrX	154773684	154810485
MPP1_chrX_154773684_154810485	0/0	t0004	610	1	1	0	0	0	0	copy fasta	MPP1	chrX	154773684	154810485
MPP1_chrX_154773684_154810485	0/0	t0005	606	1	0	0	1	0	0	copy fasta	MPP1	chrX	154773684	154810485
MPP1_chrX_154773684_154810485	0/0	t0006	603	1	0	1	0	0	0	copy fasta	MPP1	chrX	154773684	154810485
MPP1_chrX_154773684_154810485	0/0	t0007	606	1	1	0	0	0	0	copy fasta	MPP1	chrX	154773684	154810485
MPP2_chr17_43870360_43912536	0/0	t0001	2540	155	37	34	54	8	22	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/1	t0002	2540	44	2	15	22	0	4	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0003	2544	13	13	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0004	2540	9	9	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	1/0	t0005	2544	9	5	0	0	3	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0006	2540	9	1	5	0	1	2	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0007	2572	7	6	1	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0008	2540	7	0	6	0	1	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0009	2544	7	7	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0010	2544	3	2	1	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0011	2540	2	0	0	0	0	2	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0012	2544	2	2	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0013	2544	2	2	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0014	2544	2	2	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0015	2540	2	0	0	0	2	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0016	2540	1	0	1	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0017	2540	1	0	0	0	1	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0018	2540	1	0	0	1	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0019	2544	1	1	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0020	2558	1	0	1	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0021	2570	1	1	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0022	2557	1	1	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0023	2569	1	1	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0024	2540	1	0	0	0	0	1	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0025	2540	1	0	1	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0026	2540	1	0	0	0	0	1	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0027	2540	1	0	0	1	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	t0028	2540	1	0	1	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP3_chr17_43795811_43838146	1/1	t0001	1033	311	73	73	109	10	44	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	t0002	1033	17	15	2	0	0	0	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	t0003	1033	1	1	0	0	0	0	copy fasta	MPP3	chr17	43795811	43838146