JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPRIP_chr17_17037457_17197643	0/0	t0044	8159	2	0	0	1	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0045	8159	2	0	0	2	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0046	8148	2	0	0	2	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0047	8148	2	1	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0048	8136	2	0	0	2	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0049	8159	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0050	8147	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0051	8143	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0052	8143	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0053	8143	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0054	8146	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0055	8147	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0056	8144	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0057	8135	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0058	8145	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0059	8145	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0060	8146	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0061	8148	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0062	8143	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0063	8146	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0064	8144	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0065	8144	1	0	0	0	1	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0066	8144	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0067	8143	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0068	8145	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0069	8146	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0070	8141	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0071	8141	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0072	8141	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0073	8140	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0074	8142	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0075	8147	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0076	8151	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0077	8155	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0078	8159	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0079	8163	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0080	8148	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0081	8159	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0082	8160	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0083	8160	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0084	8158	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0085	8158	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0086	8159	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0087	8161	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0088	8148	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0089	8158	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0090	8160	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0091	8162	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0092	8148	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0093	8158	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643