JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPRIP_chr17_17037457_17197643	0/0	t0094	8159	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0095	8160	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0096	8160	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0097	8148	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0098	8158	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0099	8159	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0100	8149	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0101	8148	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0102	8148	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0103	8149	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0104	8148	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0105	8150	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0106	8150	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0107	8150	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0108	8150	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0109	8150	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0110	8150	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0111	8164	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0112	8159	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0113	8160	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	t0114	8148	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	1/0	t0115	8142	1	0	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPST_chr22_37014742_37034815	1/1	t0001	397	359	77	68	157	18	37	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	t0002	393	10	10	0	0	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	t0003	397	8	8	0	0	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	t0004	397	3	1	2	0	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	t0005	393	1	1	0	0	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	t0006	393	1	1	0	0	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	t0007	397	1	0	0	0	0	1	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	t0008	397	1	0	0	1	0	0	copy fasta	MPST	chr22	37014742	37034815
MPV17L2_chr19_18188218_18201948	1/0	t0001	958	103	12	12	63	1	14	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0002	959	49	22	5	17	0	5	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0003	957	36	2	8	17	1	8	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/1	t0004	958	31	4	10	11	2	3	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0005	959	29	8	7	7	5	2	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0006	958	29	4	7	11	4	3	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0007	960	16	4	8	1	1	2	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0008	960	13	13	0	0	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0009	960	12	6	4	2	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0010	957	11	0	4	5	0	2	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0011	959	5	5	0	0	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0012	958	5	5	0	0	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0013	959	5	3	0	1	1	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0014	959	4	1	2	0	0	1	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0015	958	4	3	0	0	1	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0016	959	3	0	0	0	0	3	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0017	957	3	0	3	0	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0018	957	2	0	1	0	0	1	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0019	958	2	0	2	0	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0020	958	1	0	0	0	0	1	copy fasta	MPV17L2	chr19	18188218	18201948