JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPV17L2_chr19_18188218_18201948	0/0	t0021	958	1	0	0	1	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0022	960	1	1	0	0	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0023	958	1	1	0	0	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0024	958	1	0	0	1	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0025	958	1	1	0	0	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0026	958	1	1	0	0	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0027	959	1	0	0	1	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0028	958	1	0	0	1	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0029	958	1	1	0	0	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0030	959	1	0	0	1	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0031	957	1	1	0	0	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0032	959	1	0	0	0	0	1	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0033	958	1	0	1	0	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0034	958	1	0	0	1	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	t0035	957	1	0	0	1	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L_chr16_15390754_15418271	0/1	t0001	5306	49	15	18	2	5	8	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0002	5304	45	1	1	39	1	3	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0003	5302	43	3	5	28	1	6	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0004	5304	22	20	2	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0005	5302	21	6	0	13	0	2	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0006	5304	18	0	5	13	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0007	5307	17	1	9	5	0	2	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0008	5302	15	4	2	6	1	2	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0009	5302	12	0	0	11	0	1	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0010	5306	12	0	9	0	0	3	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0011	5307	9	1	2	4	0	2	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0012	5305	8	0	3	0	4	1	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0013	5307	7	1	3	0	2	1	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0014	5309	7	6	1	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0015	5307	6	0	0	6	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0016	5307	6	0	0	6	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0017	5305	6	0	3	0	1	2	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0018	5304	5	5	0	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0019	5308	4	0	2	2	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0020	5305	4	0	0	1	0	3	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0021	5305	4	0	0	4	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0022	5303	4	3	0	1	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0023	5303	3	0	0	3	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0024	5302	3	0	0	3	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0025	5305	3	0	0	3	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0026	5307	3	0	2	0	0	1	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0027	5303	3	0	0	2	0	1	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0028	5305	3	3	0	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0029	5307	3	0	1	0	0	2	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0030	5302	2	0	0	2	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0031	5303	2	0	0	2	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0032	5307	2	0	0	0	0	2	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0033	5303	2	2	0	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0034	5305	2	2	0	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0035	5301	2	2	0	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271