JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPV17L_chr16_15390754_15418271	0/0	t0086	5305	1	0	1	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0087	5305	1	0	1	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0088	5304	1	1	0	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0089	5306	1	0	0	1	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0090	5307	1	0	1	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0091	5306	1	0	0	1	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0092	5306	1	1	0	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0093	5307	1	0	0	1	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0094	5306	1	0	1	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0095	5306	1	0	0	0	1	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0096	5307	1	1	0	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0097	5306	1	0	0	0	0	1	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0098	5304	1	1	0	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0099	5307	1	0	0	0	0	1	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0100	5306	1	1	0	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0101	5309	1	0	0	0	0	1	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0102	5308	1	1	0	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0103	5308	1	0	0	0	1	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0104	5310	1	0	0	1	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0105	5303	1	1	0	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	t0106	5306	1	1	0	0	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17_chr2_27304492_27328097	1/1	t0001	472	297	81	66	102	12	34	copy fasta	MPV17	chr2	27304492	27328097
MPV17_chr2_27304492_27328097	0/0	t0002	472	3	3	0	0	0	0	copy fasta	MPV17	chr2	27304492	27328097
MPV17_chr2_27304492_27328097	0/0	t0003	472	1	1	0	0	0	0	copy fasta	MPV17	chr2	27304492	27328097
MPV17_chr2_27304492_27328097	0/0	t0004	472	1	1	0	0	0	0	copy fasta	MPV17	chr2	27304492	27328097
MPZL1_chr1_167716982_167796919	0/0	t0001	4168	77	12	10	44	5	6	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0002	4168	74	5	18	42	1	8	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	1/1	t0003	4169	55	5	9	28	2	9	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0004	4168	25	0	4	15	1	5	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0005	4168	19	7	7	1	3	1	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0006	4168	17	17	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0007	4168	15	2	4	9	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0008	4169	7	1	4	0	1	1	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0009	4168	6	6	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0010	4168	6	0	2	0	0	4	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0011	4169	6	0	0	6	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0012	4168	5	5	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0013	4168	4	4	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0014	4168	4	4	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0015	4168	4	3	1	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0016	4168	4	3	1	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0017	4168	3	3	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0018	4169	3	0	0	3	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0019	4167	3	3	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0020	4169	2	0	1	1	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0021	4168	2	2	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0022	4168	2	0	0	2	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0023	4168	2	1	1	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0024	4168	2	0	2	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0025	4169	2	2	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919