JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPZL1_chr1_167716982_167796919	0/0	t0026	4169	2	1	0	1	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0027	4168	1	0	0	0	1	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0028	4168	1	0	0	0	0	1	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0029	4168	1	0	1	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0030	4169	1	0	0	1	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0031	4168	1	1	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0032	4168	1	0	0	1	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0033	4168	1	0	0	1	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0034	4168	1	0	0	1	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0035	4168	1	0	0	0	0	1	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0036	4168	1	1	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0037	4169	1	0	0	1	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0038	4169	1	0	0	1	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0039	4168	1	0	1	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0040	4168	1	1	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0041	4168	1	0	0	0	0	1	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0042	4168	1	0	0	0	0	1	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0043	4168	1	1	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0044	4168	1	0	1	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0045	4169	1	0	0	1	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0046	4168	1	0	0	1	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0047	4168	1	0	0	1	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0048	4169	1	0	0	0	0	1	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0049	4169	1	0	1	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0050	4169	1	0	0	1	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0051	4169	1	1	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0052	4168	1	0	0	0	0	1	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	t0053	4168	1	1	0	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL2_chr11_118248416_118269297	0/1	t0001	1975	181	10	28	104	11	27	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	1/0	t0002	1975	151	18	38	79	7	8	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0003	1975	17	17	0	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0004	1975	17	15	2	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0005	1975	14	12	2	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0006	1975	12	11	1	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0007	1975	10	5	0	5	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0008	1975	4	0	0	0	0	4	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0009	1975	2	0	0	2	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0010	1958	1	1	0	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0011	1975	1	1	0	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0012	1975	1	1	0	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0013	1975	1	0	1	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0014	1975	1	1	0	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0015	1975	1	0	0	0	0	1	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0016	1975	1	0	0	1	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	t0017	1975	1	0	0	1	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL3_chr11_118221690_118257365	0/1	t0001	3265	138	6	23	80	5	23	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	1/0	t0002	3276	76	2	15	48	5	5	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0003	3275	63	16	18	25	1	3	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0004	3275	28	26	2	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0005	3277	12	0	2	8	0	2	copy fasta	MPZL3	chr11	118221690	118257365