Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGEF16_chr1_3449665_3486113	0/0	t0002	695	87	36	19	27	1	4	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0003	695	10	0	0	10	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0004	695	5	0	0	5	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0005	695	4	4	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0006	695	3	3	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0007	693	3	3	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	1/0	t0008	693	3	2	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0009	695	2	2	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0010	695	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0011	695	1	0	0	1	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0012	695	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0013	695	1	0	0	1	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0014	693	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0015	695	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0016	695	1	0	1	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0017	695	1	0	0	1	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0018	695	1	0	0	0	0	1	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	t0019	695	1	0	0	1	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF17_chr11_73303276_73374388	1/1	t0001	1972	142	40	26	53	10	11	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0002	1972	30	24	0	6	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0003	1972	18	8	6	0	3	1	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0004	1972	13	7	5	0	0	1	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0005	1972	6	0	3	0	0	3	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0006	1972	3	2	1	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0007	1972	2	2	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0008	1972	2	2	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0009	1972	2	0	0	0	1	1	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0010	1972	2	0	0	2	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0011	1972	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0012	1972	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0013	1972	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0014	1972	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0015	1972	1	0	0	1	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0016	1972	1	0	0	0	0	1	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0017	1972	1	0	1	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	t0018	1972	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF18_chr19_7343937_7477478	1/1	t0001	2596	90	19	12	47	2	8	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0002	2596	75	10	22	29	4	10	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0003	2596	43	3	13	13	3	11	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0004	2597	18	18	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0005	2596	8	8	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0006	2596	8	2	1	3	0	2	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0007	2596	6	6	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0008	2596	5	1	0	0	2	2	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0009	2596	5	4	1	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0010	2597	5	5	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0011	2596	4	0	0	3	0	1	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0012	2596	2	0	2	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0013	2596	2	0	0	2	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0014	2914	2	2	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478