JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPZL3_chr11_118221690_118257365	0/0	t0006	3275	11	10	1	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0007	3277	9	9	0	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0008	3265	9	0	1	0	6	2	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0009	3278	7	6	1	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0010	3276	5	5	0	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0011	3275	5	4	0	1	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0012	3276	4	0	1	3	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0013	3276	3	0	0	0	0	3	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0014	3276	3	3	0	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0015	3275	2	0	1	0	1	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0016	3275	2	0	0	2	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0017	3264	2	0	0	2	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0018	3265	2	0	2	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0019	3277	1	0	1	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0020	3276	1	0	1	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0021	3276	1	0	1	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0022	3275	1	1	0	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0023	3275	1	0	0	1	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0024	3276	1	0	0	1	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0025	3276	1	0	0	1	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0026	3276	1	0	1	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0027	3276	1	0	0	1	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0028	3278	1	0	1	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0029	3265	1	0	0	0	0	1	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0030	3265	1	0	0	0	0	1	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0031	3265	1	0	0	1	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0032	3275	1	1	0	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0033	3265	1	1	0	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0034	3275	1	1	0	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	t0035	3276	1	1	0	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZ_chr1_161299735_161314968	1/0	t0001	1205	337	52	70	168	13	33	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0002	1205	29	20	7	0	0	2	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/1	t0003	1209	27	4	5	4	4	9	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0004	1209	12	1	0	9	0	2	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0005	1209	7	7	0	0	0	0	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0006	1197	6	0	0	6	0	0	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0007	1205	5	4	1	0	0	0	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0008	1204	4	4	0	0	0	0	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0009	1204	4	4	0	0	0	0	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0010	1205	3	0	0	3	0	0	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0011	1204	2	2	0	0	0	0	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0012	1205	2	0	0	2	0	0	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0013	1205	1	0	0	1	0	0	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0014	1209	1	0	1	0	0	0	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0015	1209	1	0	0	1	0	0	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0016	1209	1	0	0	0	1	0	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0017	1205	1	0	1	0	0	0	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	t0018	1205	1	0	1	0	0	0	copy fasta	MPZ	chr1	161299735	161314968
MR1_chr1_181028983_181066938	0/0	t0001	6680	92	2	14	65	1	10	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0002	6683	82	9	16	50	2	5	copy fasta	MR1	chr1	181028983	181066938