JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MR1_chr1_181028983_181066938	1/0	t0003	6699	21	2	3	12	2	1	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0004	6695	18	2	1	9	3	3	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0005	6683	15	1	3	7	2	2	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0006	6698	14	0	3	8	1	2	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0007	6702	12	2	7	1	1	1	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0008	6683	11	10	1	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0009	6705	11	0	6	2	0	3	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0010	6686	10	0	0	10	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0011	6689	7	0	7	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0012	6695	7	0	1	6	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0013	6701	7	7	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0014	6683	6	5	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0015	6679	5	5	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0016	6696	5	5	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0017	6691	5	5	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0018	6683	4	4	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0019	6683	3	3	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0020	6699	3	0	0	0	3	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0021	6692	3	0	2	0	0	1	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0022	6702	3	0	3	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0023	6701	3	0	0	3	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0024	6702	3	2	1	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0025	6702	3	3	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0026	6683	2	2	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0027	6682	2	0	1	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0028	6683	2	2	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/1	t0029	6683	2	0	1	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0030	6680	2	0	0	2	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0031	6690	2	2	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0032	6696	2	1	0	0	1	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0033	6698	2	1	1	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0034	6699	2	0	0	2	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0035	6699	2	2	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0036	6698	2	0	0	2	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0037	6708	2	0	0	0	0	2	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0038	6680	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0039	6683	1	0	1	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0040	6683	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0041	6684	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0042	6682	1	0	0	0	0	1	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0043	6682	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0044	6683	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0045	6683	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0046	6680	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0047	6683	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0048	6681	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0049	6680	1	0	1	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0050	6683	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0051	6692	1	0	1	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0052	6683	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938