JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MR1_chr1_181028983_181066938	0/0	t0053	6682	1	0	0	0	0	1	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0054	6684	1	0	1	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0055	6683	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0056	6684	1	0	1	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0057	6683	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0058	6683	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0059	6699	1	0	0	0	0	1	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0060	6702	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0061	6696	1	0	0	0	0	1	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0062	6680	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0063	6692	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0064	6695	1	0	1	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0065	6695	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0066	6696	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0067	6695	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0068	6696	1	0	0	0	0	1	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0069	6699	1	0	0	0	0	1	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0070	6698	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0071	6698	1	0	0	0	0	1	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0072	6701	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0073	6702	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0074	6702	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0075	6701	1	0	0	0	0	1	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0076	6704	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0077	6704	1	0	1	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0078	6680	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0079	6691	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0080	6691	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0081	6695	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	t0082	6705	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MRAP2_chr6_84028772_84095881	1/1	t0001	1520	128	14	24	63	6	19	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0002	1520	53	8	8	30	3	4	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0003	1519	52	36	11	0	1	4	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0004	1537	10	8	2	0	0	0	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0005	1516	6	6	0	0	0	0	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0006	1519	3	3	0	0	0	0	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0007	1537	3	0	0	0	0	3	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0008	1536	3	3	0	0	0	0	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0009	1516	2	2	0	0	0	0	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0010	1536	2	2	0	0	0	0	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0011	1517	1	1	0	0	0	0	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0012	1520	1	0	1	0	0	0	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0013	1520	1	0	0	1	0	0	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0014	1520	1	0	0	0	0	1	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0015	1520	1	0	0	0	0	1	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0016	1519	1	1	0	0	0	0	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0017	1519	1	1	0	0	0	0	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0018	1519	1	1	0	0	0	0	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0019	1536	1	1	0	0	0	0	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	t0020	1536	1	1	0	0	0	0	copy fasta	MRAP2	chr6	84028772	84095881