JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRAP_chr21_32293855_32317290	1/0	t0001	412	332	51	67	160	13	40	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/1	t0002	412	94	47	13	28	1	4	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	t0003	412	7	0	0	7	0	0	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	t0004	412	1	0	0	0	0	1	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	t0005	412	1	0	0	0	0	1	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	t0006	412	1	0	0	1	0	0	copy fasta	MRAP	chr21	32293855	32317290
MRAS_chr3_138343579_138410533	0/1	t0001	3472	129	29	25	52	3	19	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0002	3472	41	8	3	29	0	1	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	1/0	t0003	3472	28	6	9	3	3	6	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0004	3472	19	0	4	9	1	5	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0005	3472	14	13	1	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0006	3471	10	8	2	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0007	3472	10	9	1	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0008	3472	5	0	3	0	0	2	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0009	3472	5	5	0	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0010	3472	3	2	1	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0011	3472	3	1	2	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0012	3472	2	0	0	2	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0013	3472	2	2	0	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0014	3472	1	0	0	1	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0015	3472	1	1	0	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0016	3472	1	1	0	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0017	3472	1	0	0	1	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0018	3472	1	0	0	1	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0019	3472	1	0	1	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0020	3472	1	0	0	0	0	1	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0021	3472	1	1	0	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0022	3472	1	0	0	1	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0023	3472	1	1	0	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0024	3472	1	0	0	0	1	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0025	3472	1	0	0	1	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	t0026	3471	1	1	0	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRC1_chr10_17804348_17916164	0/1	t0001	818	228	83	42	66	11	25	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	1/0	t0002	818	128	11	24	74	7	11	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	t0003	818	2	2	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	t0004	818	2	0	0	2	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	t0005	818	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	t0006	818	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	t0007	818	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	t0008	818	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC2_chr17_62622670_62698597	1/1	t0001	1280	275	63	63	106	9	32	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	t0002	1280	19	7	4	8	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	t0003	1280	4	4	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	t0004	1280	4	3	1	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	t0005	1280	4	4	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	t0006	1280	3	0	1	2	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	t0007	1280	1	0	1	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	t0008	1280	1	0	0	0	1	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	t0009	1280	1	1	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRE11_chr11_94410570_94498844	0/0	t0001	4714	80	12	16	40	4	8	copy fasta	MRE11	chr11	94410570	94498844