JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRE11_chr11_94410570_94498844	0/0	t0002	4715	62	5	11	40	3	3	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0003	4722	24	0	2	20	0	2	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0004	4720	18	0	0	17	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0005	4727	17	1	0	15	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0006	4715	14	13	1	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0007	4714	13	12	1	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0008	4722	9	0	7	2	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0009	4721	8	1	0	6	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0010	4722	7	2	3	0	2	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0011	4729	7	0	2	3	0	2	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0012	4727	7	7	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0013	4715	6	1	0	5	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0014	4716	6	1	0	3	0	2	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0015	4717	5	0	5	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0016	4718	5	0	0	5	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0017	4719	5	5	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0018	4714	4	3	1	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0019	4720	4	0	2	0	1	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0020	4714	4	4	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0021	4715	3	0	1	0	0	2	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0022	4715	3	0	0	1	0	2	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0023	4714	3	0	0	3	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0024	4715	3	0	0	3	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0025	4719	3	0	0	0	1	2	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0026	4723	3	0	2	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0027	4726	3	0	0	3	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0028	4703	2	0	0	2	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0029	4715	2	2	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0030	4715	2	2	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0031	4719	2	0	0	2	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0032	4724	2	0	1	0	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0033	4728	2	0	0	2	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0034	4731	2	1	0	0	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0035	4729	2	2	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0036	4715	2	2	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0037	4714	1	0	1	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0038	4723	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0039	4715	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0040	4728	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0041	4714	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0042	4714	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0043	4716	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0044	4715	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	1/0	t0045	4715	1	0	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0046	4715	1	0	0	0	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0047	4716	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0048	4716	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0049	4714	1	0	0	0	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0050	4714	1	0	0	0	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0051	4714	1	0	0	0	1	0	copy fasta	MRE11	chr11	94410570	94498844