JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRE11_chr11_94410570_94498844	0/0	t0052	4715	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0053	4716	1	0	0	0	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0054	4713	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0055	4703	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0056	4715	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0057	4717	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0058	4714	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0059	4697	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0060	4716	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0061	4718	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0062	4718	1	0	0	0	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0063	4719	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0064	4720	1	0	1	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0065	4719	1	0	0	0	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0066	4715	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0067	4723	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0068	4721	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0069	4720	1	0	1	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0070	4701	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0071	4721	1	0	0	0	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0072	4727	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0073	4724	1	0	0	0	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0074	4728	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0075	4727	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0076	4726	1	0	1	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0077	4730	1	0	1	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0078	4728	1	0	0	0	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0079	4730	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/1	t0080	4728	1	0	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0081	4728	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0082	4728	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0083	4727	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0084	4726	1	0	0	0	0	1	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0085	4732	1	0	0	1	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	t0086	4730	1	0	0	0	0	1	copy fasta	MRE11	chr11	94410570	94498844
MREG_chr2_215937584_216018551	0/0	t0001	2506	51	14	5	29	1	2	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0002	2507	39	11	3	22	0	3	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0003	2501	38	5	12	17	2	2	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0004	2505	31	3	4	20	0	4	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0005	2501	26	1	7	7	5	6	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	1/0	t0006	2504	20	0	8	2	5	4	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0007	2508	16	6	2	7	0	1	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0008	2506	15	3	2	9	0	1	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/1	t0009	2502	12	3	1	6	1	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0010	2507	11	3	2	6	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0011	2501	11	0	0	11	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0012	2502	8	1	2	4	0	1	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0013	2505	7	0	2	2	0	3	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0014	2505	6	2	0	1	0	3	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0015	2506	6	1	1	2	0	2	copy fasta	MREG	chr2	215937584	216018551