JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MREG_chr2_215937584_216018551	0/0	t0016	2506	5	0	1	0	2	2	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0017	2505	5	0	0	2	0	3	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0018	2499	5	0	3	0	0	2	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0019	2502	4	2	2	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0020	2502	4	0	2	2	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0021	2503	4	1	0	3	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0022	2503	4	3	1	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0023	2507	3	1	1	0	1	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0024	2508	3	2	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0025	2506	3	0	0	2	0	1	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0026	2507	3	0	0	3	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0027	2505	3	0	1	2	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0028	2506	3	0	0	3	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0029	2507	2	0	1	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0030	2506	2	0	0	2	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0031	2506	2	0	2	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0032	2507	2	0	2	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0033	2504	2	2	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0034	2503	2	0	0	1	0	1	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0035	2499	2	2	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0036	2500	2	2	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0037	2502	2	2	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0038	2501	2	0	0	2	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0039	2501	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0040	2507	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0041	2506	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0042	2505	1	0	1	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0043	2507	1	0	1	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0044	2508	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0045	2505	1	0	0	0	0	1	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0046	2507	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0047	2507	1	0	0	0	0	1	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0048	2506	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0049	2505	1	0	1	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0050	2507	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0051	2509	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0052	2508	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0053	2506	1	0	1	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0054	2507	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0055	2507	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0056	2504	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0057	2504	1	0	1	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0058	2506	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0059	2506	1	0	1	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0060	2507	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0061	2508	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0062	2505	1	0	0	0	1	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0063	2505	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0064	2505	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0065	2506	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551