JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MREG_chr2_215937584_216018551	0/0	t0066	2503	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0067	2503	1	0	0	0	0	1	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0068	2504	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0069	2504	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0070	2500	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0071	2501	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0072	2501	1	0	0	0	0	1	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0073	2502	1	0	0	0	0	1	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0074	2503	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0075	2508	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0076	2507	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0077	2506	1	0	0	0	0	1	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0078	2507	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0079	2504	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0080	2505	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0081	2506	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0082	2500	1	0	0	0	0	1	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0083	2502	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0084	2502	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0085	2503	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0086	2503	1	0	1	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0087	2502	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	t0088	2495	1	0	0	1	0	0	copy fasta	MREG	chr2	215937584	216018551
MRFAP1L1_chr4_6702701_6714865	0/1	t0001	1195	355	81	55	177	8	33	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1L1_chr4_6702701_6714865	0/0	t0002	1194	79	4	20	35	6	14	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1L1_chr4_6702701_6714865	0/0	t0003	1195	8	8	0	0	0	0	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1L1_chr4_6702701_6714865	1/0	t0004	1195	6	5	0	0	0	0	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1L1_chr4_6702701_6714865	0/0	t0005	1195	3	0	0	2	0	1	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1L1_chr4_6702701_6714865	0/0	t0006	1195	2	1	1	0	0	0	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1L1_chr4_6702701_6714865	0/0	t0007	1195	1	1	0	0	0	0	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1L1_chr4_6702701_6714865	0/0	t0008	1195	1	0	0	1	0	0	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1L1_chr4_6702701_6714865	0/0	t0009	1194	1	0	0	1	0	0	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1_chr4_6635685_6647729	0/1	t0001	1191	315	33	57	173	15	36	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	1/0	t0002	1191	60	27	11	11	3	7	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	0/0	t0003	1191	22	19	3	0	0	0	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	0/0	t0004	1191	11	11	0	0	0	0	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	0/0	t0005	1191	8	0	0	8	0	0	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	0/0	t0006	1191	5	0	5	0	0	0	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	0/0	t0007	1191	2	2	0	0	0	0	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	0/0	t0008	1191	2	0	0	0	0	2	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	0/0	t0009	1191	1	0	0	1	0	0	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	0/0	t0010	1191	1	0	0	0	0	1	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	0/0	t0011	1191	1	0	0	0	0	1	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	0/0	t0012	1191	1	0	0	1	0	0	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	0/0	t0013	1191	1	0	0	0	0	1	copy fasta	MRFAP1	chr4	6635685	6647729
MRGBP_chr20_62791473_62806729	1/0	t0001	2138	128	17	30	57	6	17	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0002	2138	126	26	20	67	3	10	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/1	t0003	2138	29	10	7	5	4	2	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0004	2138	25	0	1	22	0	2	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0005	2138	18	15	3	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729