JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRGBP_chr20_62791473_62806729	0/0	t0006	2138	13	7	1	1	1	3	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0007	2138	9	0	6	0	3	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0008	2138	6	0	0	6	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0009	2138	6	0	0	4	0	2	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0010	2138	6	5	1	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0011	2138	3	2	1	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0012	2138	3	0	0	0	0	3	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0013	2138	2	0	0	2	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0014	2138	2	2	0	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0015	2138	2	0	1	0	1	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0016	2138	2	0	2	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0017	2138	2	0	0	2	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0018	2138	2	1	1	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0019	2138	2	2	0	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0020	2138	2	2	0	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0021	2138	2	1	1	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0022	2138	2	2	0	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0023	2138	1	0	0	0	0	1	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0024	2138	1	0	0	1	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0025	2138	1	0	0	1	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0026	2138	1	1	0	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0027	2138	1	1	0	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0028	2138	1	1	0	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0029	2138	1	1	0	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0030	2161	1	0	0	1	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0031	2138	1	0	1	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0032	2138	1	0	0	1	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0033	2138	1	0	0	1	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0034	2138	1	1	0	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0035	2138	1	0	0	0	0	1	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0036	2138	1	0	0	1	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0037	2138	1	0	0	0	0	1	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0038	2138	1	1	0	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0039	2138	1	1	0	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	t0040	2138	1	1	0	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGPRE_chr11_3220030_3237417	0/0	t0001	3170	119	2	18	77	4	18	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/1	t0002	3170	56	14	16	11	4	10	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0003	3170	48	12	1	35	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0004	3170	21	0	12	5	0	4	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0005	3170	17	2	1	11	0	3	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0006	3170	15	0	3	9	0	3	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0007	3170	14	7	1	6	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0008	3170	10	3	3	0	1	3	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0009	3170	10	0	0	10	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0010	3170	9	0	0	8	0	1	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0011	3170	8	0	0	8	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0012	3170	7	0	5	0	2	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0013	3170	6	0	1	4	0	1	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0014	3170	6	0	0	6	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0015	3170	5	0	3	0	2	0	copy fasta	MRGPRE	chr11	3220030	3237417