Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGEF18_chr19_7343937_7477478	0/0	t0015	2596	2	2	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0016	2597	2	1	1	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0017	2596	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0018	2596	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0019	2596	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0020	2596	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0021	2597	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0022	2596	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0023	2596	1	0	1	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0024	2597	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0025	2596	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0026	2596	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0027	2596	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0028	2914	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0029	2596	1	0	1	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0030	2596	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0031	2596	1	0	0	0	1	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0032	2596	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0033	2596	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0034	2596	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0035	2596	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0036	2596	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	t0037	2596	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF19_chr1_16192854_16217652	1/1	t0001	914	246	56	38	111	13	26	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	t0002	914	79	7	29	24	3	16	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	t0003	914	20	17	3	0	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	t0004	914	6	5	1	0	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	t0005	914	5	5	0	0	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	t0006	914	2	2	0	0	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	t0007	914	1	0	0	1	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	t0008	914	1	0	0	1	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	t0009	914	1	0	1	0	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	t0010	914	1	0	0	1	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF1_chr19_41878184_41912452	1/1	t0001	491	230	65	46	84	8	25	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	t0002	491	1	0	0	1	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	t0003	491	1	0	0	1	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	t0004	491	1	1	0	0	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	t0005	491	1	0	0	0	0	1	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF25_chr12_57606435_57622245	1/1	t0001	812	310	91	64	107	11	35	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	t0002	812	66	1	12	43	3	7	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	t0003	812	18	0	0	17	0	1	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	t0004	812	15	0	0	15	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	t0005	812	5	4	1	0	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	t0006	812	2	0	0	2	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	t0007	812	1	0	0	0	0	1	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	t0008	812	1	0	1	0	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	t0009	812	1	1	0	0	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	t0010	812	1	0	0	1	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	t0011	812	1	0	0	1	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	t0012	812	1	0	0	1	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245