JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRGPRE_chr11_3220030_3237417	0/0	t0066	3170	1	0	1	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0067	3169	1	1	0	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0068	3170	1	1	0	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0069	3170	1	0	0	1	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0070	3153	1	0	0	1	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0071	3170	1	0	0	1	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0072	3170	1	0	0	1	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0073	3169	1	1	0	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0074	3169	1	1	0	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0075	3170	1	0	0	1	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0076	3170	1	1	0	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	t0077	3170	1	0	0	0	0	1	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRF_chr11_68999398_69018246	1/1	t0001	1101	299	64	51	145	10	27	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	t0002	1101	107	18	24	49	2	14	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	t0003	1101	11	0	0	11	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	t0004	1101	6	0	1	0	0	5	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	t0005	1101	4	4	0	0	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	t0006	1101	3	3	0	0	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	t0007	1101	2	2	0	0	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	t0008	1101	1	1	0	0	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	t0009	1101	1	1	0	0	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	t0010	1101	1	1	0	0	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	t0011	1101	1	1	0	0	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	t0012	1101	1	1	0	0	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	t0013	1101	1	0	0	1	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRX1_chr11_18928499_18944414	0/0	t0001	478	325	75	50	152	13	35	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	t0002	478	105	12	26	52	3	12	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	t0003	478	2	2	0	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	t0004	478	1	0	0	1	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	t0005	478	1	0	0	1	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	t0006	22627	1	1	0	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	t0007	478	1	0	0	1	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	t0008	478	1	1	0	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	t0009	477	1	0	0	1	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX2_chr11_19049455_19065717	1/0	t0001	1080	219	55	40	102	5	16	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	t0002	1080	111	23	21	48	8	11	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/1	t0003	1080	102	3	14	61	4	19	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	t0004	1080	6	6	0	0	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	t0005	1080	4	1	2	0	1	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	t0006	1080	3	0	0	3	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	t0007	1080	3	3	0	0	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	t0008	1080	2	2	0	0	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	t0009	1080	2	2	0	0	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	t0010	1080	2	2	0	0	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	t0011	1080	1	0	1	0	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	t0012	1080	1	1	0	0	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	t0013	1080	1	1	0	0	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	t0014	1080	1	1	0	0	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX3_chr11_18127571_18143488	0/0	t0001	512	295	33	49	177	8	28	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	t0002	512	56	29	14	4	4	5	copy fasta	MRGPRX3	chr11	18127571	18143488