JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRGPRX3_chr11_18127571_18143488	0/1	t0003	512	48	7	10	19	2	9	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	t0004	512	17	13	4	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	1/0	t0005	512	16	15	0	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	t0006	512	4	0	0	4	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	t0007	512	2	0	0	2	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	t0008	512	1	1	0	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	t0009	512	1	0	1	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX4_chr11_18167837_18179280	1/1	t0001	476	273	90	38	103	10	30	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	t0002	476	120	5	27	71	4	13	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	t0003	476	3	0	2	0	0	1	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	t0004	476	1	0	0	1	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	t0005	476	1	0	0	1	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	t0006	476	1	0	1	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	t0007	476	1	1	0	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRI1_chr19_13759522_13779282	1/1	t0001	2069	164	21	39	71	9	22	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0002	2073	107	23	16	59	1	8	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0003	2070	71	0	13	47	5	6	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0004	2073	41	4	14	16	0	7	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0005	2074	8	0	0	8	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0006	2073	6	6	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0007	2068	5	5	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0008	2069	5	5	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0009	2074	5	5	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0010	2073	4	4	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0011	2073	4	4	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0012	2072	4	0	0	3	1	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0013	2068	3	0	0	0	0	3	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0014	2073	3	3	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0015	2073	3	3	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0016	2075	3	0	0	3	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0017	2065	2	2	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0018	2069	2	2	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0019	2069	2	0	0	2	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0020	2073	2	2	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0021	2069	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0022	2069	1	0	1	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0023	2069	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0024	2070	1	0	0	0	0	1	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0025	2069	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0026	2071	1	0	0	1	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0027	2073	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0028	2073	1	0	0	0	0	1	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0029	2073	1	0	1	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0030	2073	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0031	2075	1	0	0	0	0	1	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0032	2070	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0033	2049	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0034	2073	1	0	0	0	0	1	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0035	2074	1	0	0	1	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	t0036	2073	1	0	0	1	0	0	copy fasta	MRI1	chr19	13759522	13779282