JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRLN_chr10_59731692_59758455	1/1	t0001	595	387	69	66	194	16	40	copy fasta	MRLN	chr10	59731692	59758455
MRLN_chr10_59731692_59758455	0/0	t0002	595	22	20	2	0	0	0	copy fasta	MRLN	chr10	59731692	59758455
MRLN_chr10_59731692_59758455	0/0	t0003	595	6	5	1	0	0	0	copy fasta	MRLN	chr10	59731692	59758455
MRLN_chr10_59731692_59758455	0/0	t0004	595	2	0	2	0	0	0	copy fasta	MRLN	chr10	59731692	59758455
MRLN_chr10_59731692_59758455	0/0	t0005	595	1	0	1	0	0	0	copy fasta	MRLN	chr10	59731692	59758455
MRM1_chr17_36596583_36613964	0/0	t0001	778	170	14	31	98	7	20	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	t0002	778	153	51	36	45	4	17	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	t0003	778	25	12	3	8	1	1	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	t0004	778	22	1	3	16	0	2	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	t0005	778	6	5	1	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	t0006	778	5	0	2	2	0	1	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/1	t0007	779	3	1	0	0	0	1	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	t0008	778	3	1	0	2	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	t0009	778	1	1	0	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	t0010	778	1	1	0	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	t0011	778	1	0	0	0	1	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	t0012	778	1	1	0	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	t0013	778	1	0	0	0	1	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	t0014	778	1	0	0	0	0	1	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	t0015	778	1	0	0	0	0	1	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	t0016	778	1	0	0	1	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM2_chr7_2229195_2247205	1/1	t0001	964	374	80	73	170	12	37	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0002	965	11	10	1	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0003	964	9	0	0	9	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0004	964	6	0	0	6	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0005	964	5	0	3	0	1	1	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0006	963	4	0	0	0	0	4	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0007	964	4	4	0	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0008	963	2	1	1	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0009	964	2	0	0	2	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0010	964	2	0	0	0	1	1	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0011	964	2	0	0	0	0	2	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0012	964	2	1	1	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0013	964	2	1	1	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0014	964	1	0	1	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0015	964	1	0	0	0	0	1	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0016	964	1	0	1	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0017	963	1	1	0	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	t0018	964	1	0	0	1	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM3_chr17_777353_797509	1/1	t0001	467	425	96	76	184	18	49	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	t0002	467	15	0	2	12	0	1	copy fasta	MRM3	chr17	777353	797509
MRNIP_chr5_179832276_179863817	1/1	t0001	137	437	90	79	202	16	48	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	t0002	137	5	5	0	0	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	t0003	137	1	0	1	0	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	t0004	137	1	1	0	0	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MROH1_chr8_144143016_144266926	1/1	t0001	424	138	60	28	31	4	13	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	t0002	424	1	0	0	1	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	t0003	424	1	0	0	0	0	1	copy fasta	MROH1	chr8	144143016	144266926
MROH2A_chr2_233773330_233838418	1/1	t0001	326	366	78	66	160	18	42	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	t0002	326	11	11	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418