JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MROH2A_chr2_233773330_233838418	0/0	t0003	326	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2B_chr5_40993020_41076342	1/0	t0001	523	286	86	52	112	11	24	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/1	t0002	523	101	6	22	53	3	16	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	t0003	524	8	0	0	8	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	t0004	524	1	0	0	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH6_chr8_143561192_143577772	0/1	t0001	1106	236	53	49	101	4	28	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0002	1106	78	3	18	39	8	10	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0003	1106	34	8	10	9	6	1	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0004	1106	24	0	0	24	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0005	1106	13	13	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0006	1106	8	0	1	7	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0007	1106	6	5	1	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0008	1106	5	5	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0009	1107	5	0	1	4	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0010	1106	3	3	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0011	1106	2	2	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0012	1106	2	0	0	0	0	2	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0013	1106	2	0	0	2	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0014	1107	2	0	0	2	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0015	1107	2	0	0	2	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0016	1107	2	1	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0017	1107	2	0	1	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0018	1106	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0019	1106	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0020	1092	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0021	1106	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0022	1106	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0023	1107	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0024	1106	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0025	1107	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0026	1107	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0027	1106	1	0	1	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	t0028	1106	1	0	0	0	0	1	copy fasta	MROH6	chr8	143561192	143577772
MROH7_chr1_54636786_54715266	0/0	t0001	372	239	64	36	104	12	23	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/1	t0002	371	95	5	19	58	3	9	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	t0003	371	22	1	14	4	1	2	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	t0004	372	12	11	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	t0005	371	9	9	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	t0006	372	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	t0007	372	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	1/0	t0008	372	1	0	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH9_chr1_170930534_171069765	1/1	t0001	517	177	48	43	66	0	18	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	t0002	517	19	17	2	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	t0003	517	11	11	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	t0004	517	8	0	8	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	t0005	514	5	5	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	t0006	517	3	3	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	t0007	517	2	2	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	t0008	517	1	0	1	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MRO_chr18_50790130_50825016	0/0	t0001	4457	81	28	5	44	0	4	copy fasta	MRO	chr18	50790130	50825016