JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRO_chr18_50790130_50825016	0/1	t0002	4455	58	2	5	40	5	5	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0003	4454	39	16	6	12	1	4	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0004	4455	27	0	13	8	1	5	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0005	4455	19	0	0	19	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0006	4456	18	2	3	12	0	1	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0007	4457	12	5	1	5	0	1	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0008	4456	12	0	8	0	2	2	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0009	4455	12	4	2	5	1	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0010	4455	9	0	0	4	1	4	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0011	4455	8	0	4	1	3	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0012	4455	8	0	0	7	0	1	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0013	4454	7	3	3	0	1	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0014	4456	7	0	7	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	1/0	t0015	4454	6	5	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0016	4456	5	0	2	0	0	3	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0017	4455	5	4	1	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0018	4455	4	0	0	4	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0019	4456	4	0	0	4	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0020	4457	4	0	4	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0021	4457	3	0	3	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0022	4455	3	0	1	0	0	2	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0023	4457	3	0	1	0	2	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0024	4454	3	3	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0025	4455	3	0	2	0	0	1	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0026	4457	3	0	0	3	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0027	4455	2	0	0	2	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0028	4455	2	0	0	2	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0029	4456	2	0	0	2	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0030	4457	2	0	0	2	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0031	4456	2	0	0	2	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0032	4455	2	0	0	0	0	2	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0033	4456	2	0	2	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0034	4454	2	0	1	0	0	1	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0035	4457	2	0	0	2	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0036	4457	2	1	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0037	4455	2	2	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0038	4455	2	2	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0039	4456	2	2	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0040	4455	2	1	1	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0041	4457	2	0	0	2	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0042	4456	2	2	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0043	4458	2	2	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0044	4457	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0045	4455	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0046	4457	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0047	4457	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0048	4455	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0049	4455	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0050	4455	1	0	1	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0051	4456	1	1	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016