JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRO_chr18_50790130_50825016	0/0	t0052	4455	1	0	1	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0053	4455	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0054	4456	1	0	1	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0055	4499	1	0	1	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0056	4455	1	0	1	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0057	4455	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0058	4456	1	0	0	0	1	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0059	4455	1	0	1	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0060	4457	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0061	4456	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0062	4454	1	1	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0063	4455	1	1	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0064	4455	1	0	0	0	0	1	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0065	4456	1	1	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0066	4456	1	0	0	0	0	1	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0067	4455	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0068	4456	1	0	0	0	0	1	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0069	4454	1	0	1	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0070	4456	1	0	0	0	0	1	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0071	4457	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0072	4455	1	1	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0073	4458	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0074	4456	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0075	4456	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	t0076	4455	1	1	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRPL10_chr17_47818272_47836541	1/0	t0001	964	189	81	34	59	2	12	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/1	t0002	964	121	4	21	76	4	15	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	t0003	958	34	7	14	2	5	6	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	t0004	962	26	1	7	11	3	4	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	t0005	964	6	1	0	5	0	0	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	t0006	962	4	0	3	0	0	1	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	t0007	964	3	0	2	0	0	1	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	t0008	964	2	2	0	0	0	0	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	t0009	958	2	0	1	0	0	1	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	t0010	964	1	0	0	0	0	1	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	t0011	964	1	0	0	1	0	0	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	t0012	962	1	0	0	0	0	1	copy fasta	MRPL10	chr17	47818272	47836541
MRPL11_chr11_66430075_66443848	1/1	t0001	1027	273	58	47	131	13	22	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	t0002	1027	103	16	18	60	3	6	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	t0003	1027	7	6	1	0	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	t0004	1027	6	4	2	0	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	t0005	1027	6	0	0	6	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	t0006	1027	3	0	0	3	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	t0007	1027	3	3	0	0	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	t0008	1027	1	1	0	0	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	t0009	1027	1	1	0	0	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	t0010	1027	1	1	0	0	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL12_chr17_81698367_81712517	1/1	t0001	413	275	75	51	104	10	33	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	t0002	414	66	4	4	52	2	4	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	t0003	413	57	4	18	18	4	13	copy fasta	MRPL12	chr17	81698367	81712517