JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPL12_chr17_81698367_81712517	0/0	t0004	413	2	0	0	2	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	t0005	413	1	0	1	0	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	t0006	414	1	0	0	1	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	t0007	413	1	0	1	0	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	t0008	414	1	1	0	0	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	t0009	413	1	0	1	0	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	t0010	413	1	1	0	0	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	t0011	413	1	0	1	0	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	t0012	413	1	1	0	0	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	t0013	413	1	0	0	1	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	t0014	413	1	1	0	0	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	t0015	413	1	1	0	0	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	t0016	413	1	0	1	0	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL13_chr8_120390437_120450150	1/0	t0001	724	222	79	36	82	3	21	copy fasta	MRPL13	chr8	120390437	120450150
MRPL13_chr8_120390437_120450150	0/1	t0002	724	116	10	26	61	3	15	copy fasta	MRPL13	chr8	120390437	120450150
MRPL13_chr8_120390437_120450150	0/0	t0003	724	4	0	0	4	0	0	copy fasta	MRPL13	chr8	120390437	120450150
MRPL13_chr8_120390437_120450150	0/0	t0004	724	2	2	0	0	0	0	copy fasta	MRPL13	chr8	120390437	120450150
MRPL13_chr8_120390437_120450150	0/0	t0005	724	1	1	0	0	0	0	copy fasta	MRPL13	chr8	120390437	120450150
MRPL13_chr8_120390437_120450150	0/0	t0006	724	1	0	0	1	0	0	copy fasta	MRPL13	chr8	120390437	120450150
MRPL14_chr6_44108451_44132452	0/1	t0001	520	267	60	38	144	6	18	copy fasta	MRPL14	chr6	44108451	44132452
MRPL14_chr6_44108451_44132452	1/0	t0002	520	110	16	19	55	5	14	copy fasta	MRPL14	chr6	44108451	44132452
MRPL14_chr6_44108451_44132452	0/0	t0003	520	40	8	15	3	3	11	copy fasta	MRPL14	chr6	44108451	44132452
MRPL14_chr6_44108451_44132452	0/0	t0004	520	5	0	2	0	2	1	copy fasta	MRPL14	chr6	44108451	44132452
MRPL14_chr6_44108451_44132452	0/0	t0005	520	4	0	2	0	0	2	copy fasta	MRPL14	chr6	44108451	44132452
MRPL14_chr6_44108451_44132452	0/0	t0006	520	3	0	0	1	2	0	copy fasta	MRPL14	chr6	44108451	44132452
MRPL14_chr6_44108451_44132452	0/0	t0007	520	3	3	0	0	0	0	copy fasta	MRPL14	chr6	44108451	44132452
MRPL14_chr6_44108451_44132452	0/0	t0008	520	2	2	0	0	0	0	copy fasta	MRPL14	chr6	44108451	44132452
MRPL14_chr6_44108451_44132452	0/0	t0009	520	1	1	0	0	0	0	copy fasta	MRPL14	chr6	44108451	44132452
MRPL14_chr6_44108451_44132452	0/0	t0010	520	1	0	0	1	0	0	copy fasta	MRPL14	chr6	44108451	44132452
MRPL15_chr8_54130241_54153514	1/1	t0001	839	358	87	70	155	16	28	copy fasta	MRPL15	chr8	54130241	54153514
MRPL15_chr8_54130241_54153514	0/0	t0002	839	21	4	0	14	0	3	copy fasta	MRPL15	chr8	54130241	54153514
MRPL15_chr8_54130241_54153514	0/0	t0003	839	6	6	0	0	0	0	copy fasta	MRPL15	chr8	54130241	54153514
MRPL15_chr8_54130241_54153514	0/0	t0004	839	2	0	2	0	0	0	copy fasta	MRPL15	chr8	54130241	54153514
MRPL15_chr8_54130241_54153514	0/0	t0005	784	1	1	0	0	0	0	copy fasta	MRPL15	chr8	54130241	54153514
MRPL15_chr8_54130241_54153514	0/0	t0006	839	1	0	0	1	0	0	copy fasta	MRPL15	chr8	54130241	54153514
MRPL15_chr8_54130241_54153514	0/0	t0007	839	1	0	0	0	0	1	copy fasta	MRPL15	chr8	54130241	54153514
MRPL16_chr11_59801140_59815778	1/1	t0001	328	274	71	51	114	10	26	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	t0002	328	29	5	10	12	0	2	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	t0003	328	8	7	1	0	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	t0004	328	8	8	0	0	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	t0005	328	1	1	0	0	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL17_chr11_6675385_6688340	1/0	t0001	1778	249	32	47	121	14	34	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0002	1778	83	3	23	51	0	6	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0003	1778	18	14	3	0	1	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0004	1778	13	13	0	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0005	1778	10	5	4	0	1	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0006	1778	8	8	0	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0007	1778	6	6	0	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0008	1778	5	5	0	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0009	1778	4	4	0	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340