JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPL17_chr11_6675385_6688340	0/0	t0010	1778	4	3	1	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0011	1778	3	3	0	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0012	1778	2	0	0	0	0	2	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0013	1778	2	0	0	0	2	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0014	1778	2	0	0	2	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0015	1778	1	0	0	0	0	1	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0016	1778	1	1	0	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0017	1778	1	0	0	1	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0018	1778	1	0	0	1	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/1	t0019	1778	1	0	0	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0020	1778	1	1	0	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	t0021	1778	1	0	0	0	0	1	copy fasta	MRPL17	chr11	6675385	6688340
MRPL18_chr6_159785467_159803429	1/0	t0001	428	144	46	12	70	3	12	copy fasta	MRPL18	chr6	159785467	159803429
MRPL18_chr6_159785467_159803429	0/1	t0002	428	131	28	45	35	10	12	copy fasta	MRPL18	chr6	159785467	159803429
MRPL18_chr6_159785467_159803429	0/0	t0003	428	131	14	21	78	3	15	copy fasta	MRPL18	chr6	159785467	159803429
MRPL18_chr6_159785467_159803429	0/0	t0004	428	1	0	0	0	0	1	copy fasta	MRPL18	chr6	159785467	159803429
MRPL18_chr6_159785467_159803429	0/0	t0005	428	1	0	0	1	0	0	copy fasta	MRPL18	chr6	159785467	159803429
MRPL19_chr2_75641783_75667206	1/1	t0001	6947	183	14	35	105	10	17	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0002	6953	47	1	5	29	1	11	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0003	6952	43	0	9	32	0	2	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0004	6952	24	1	5	12	2	4	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0005	6952	23	23	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0006	6953	12	11	1	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0007	6953	8	8	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0008	6919	8	0	4	0	2	2	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0009	6953	6	0	6	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0010	6948	5	0	0	5	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0011	6951	4	4	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0012	6960	4	4	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0013	6960	4	4	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0014	6952	3	3	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0015	6951	3	3	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0016	6947	3	0	0	3	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0017	6947	3	0	0	2	0	1	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0018	6952	2	2	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0019	6952	2	2	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0020	6953	2	2	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0021	6947	2	0	0	2	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0022	6947	2	0	0	2	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0023	6953	1	0	0	1	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0024	6953	1	0	1	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0025	6952	1	0	0	0	0	1	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0026	6952	1	1	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0027	6952	1	1	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0028	6952	1	1	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0029	6952	1	0	0	0	0	1	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0030	6952	1	1	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0031	6952	1	0	0	1	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0032	6953	1	1	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0033	6952	1	1	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206