JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPL19_chr2_75641783_75667206	0/0	t0034	6952	1	0	0	0	0	1	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0035	6953	1	0	0	0	0	1	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0036	6948	1	1	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0037	6949	1	0	0	1	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0038	6953	1	0	0	0	0	1	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0039	6953	1	0	0	0	1	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0040	6953	1	0	0	0	1	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0041	6954	1	0	0	1	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0042	6953	1	0	0	0	0	1	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0043	6951	1	0	0	1	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0044	6953	1	0	1	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0045	6953	1	1	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0046	6952	1	1	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0047	6947	1	0	0	0	0	1	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0048	6948	1	0	0	1	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0049	6947	1	0	1	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0050	6947	1	1	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0051	6947	1	0	0	1	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0052	6947	1	0	0	1	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0053	6947	1	0	0	1	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0054	6947	1	1	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0055	6947	1	0	1	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0056	6947	1	1	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0057	6947	1	0	0	0	1	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0058	6947	1	0	1	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	t0059	6947	1	0	0	1	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL1_chr4_77857830_77957785	1/1	t0001	198	281	62	46	134	8	29	copy fasta	MRPL1	chr4	77857830	77957785
MRPL1_chr4_77857830_77957785	0/0	t0002	198	21	16	2	0	0	3	copy fasta	MRPL1	chr4	77857830	77957785
MRPL20_chr1_1396909_1412293	1/1	t0001	251	172	64	34	38	12	22	copy fasta	MRPL20	chr1	1396909	1412293
MRPL20_chr1_1396909_1412293	0/0	t0002	251	162	18	21	100	4	19	copy fasta	MRPL20	chr1	1396909	1412293
MRPL20_chr1_1396909_1412293	0/0	t0003	251	16	11	3	0	0	2	copy fasta	MRPL20	chr1	1396909	1412293
MRPL20_chr1_1396909_1412293	0/0	t0004	251	2	2	0	0	0	0	copy fasta	MRPL20	chr1	1396909	1412293
MRPL20_chr1_1396909_1412293	0/0	t0005	251	1	0	0	0	0	1	copy fasta	MRPL20	chr1	1396909	1412293
MRPL20_chr1_1396909_1412293	0/0	t0006	251	1	1	0	0	0	0	copy fasta	MRPL20	chr1	1396909	1412293
MRPL21_chr11_68886278_68908832	1/0	t0001	76	255	50	36	129	15	24	copy fasta	MRPL21	chr11	68886278	68908832
MRPL21_chr11_68886278_68908832	0/0	t0002	90	138	38	28	49	3	20	copy fasta	MRPL21	chr11	68886278	68908832
MRPL21_chr11_68886278_68908832	0/0	t0003	90	1	0	0	0	0	1	copy fasta	MRPL21	chr11	68886278	68908832
MRPL21_chr11_68886278_68908832	0/0	t0004	76	1	0	0	0	0	1	copy fasta	MRPL21	chr11	68886278	68908832
MRPL22_chr5_154936073_154974411	1/1	t0001	2553	227	35	34	127	6	23	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0002	2553	42	14	17	0	5	6	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0003	2553	38	8	8	14	3	5	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0004	2553	14	6	2	5	0	1	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0005	2553	5	4	1	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0006	2553	5	4	1	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0007	2553	5	5	0	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0008	2553	4	4	0	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0009	2553	3	2	1	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0010	2553	2	0	2	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0011	2553	2	0	0	2	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0012	2553	2	0	0	2	0	0	copy fasta	MRPL22	chr5	154936073	154974411