JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPL22_chr5_154936073_154974411	0/0	t0013	2553	1	1	0	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0014	2553	1	1	0	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0015	2553	1	1	0	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0016	2553	1	1	0	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0017	2553	1	0	0	0	0	1	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0018	2553	1	0	0	0	0	1	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0019	2553	1	0	0	0	0	1	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0020	2553	1	1	0	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	t0021	2553	1	1	0	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL23_chr11_1942332_1961600	0/1	t0001	212	390	93	72	166	15	43	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	t0002	212	7	0	6	0	1	0	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	t0003	212	1	0	0	1	0	0	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	t0004	212	1	1	0	0	0	0	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	t0005	212	1	0	0	0	0	1	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	t0006	193	1	0	0	1	0	0	copy fasta	MRPL23	chr11	1942332	1961600
MRPL24_chr1_156732303_156746088	1/1	t0001	233	251	72	29	97	13	38	copy fasta	MRPL24	chr1	156732303	156746088
MRPL24_chr1_156732303_156746088	0/0	t0002	231	67	17	29	16	0	5	copy fasta	MRPL24	chr1	156732303	156746088
MRPL24_chr1_156732303_156746088	0/0	t0003	233	44	2	19	15	3	5	copy fasta	MRPL24	chr1	156732303	156746088
MRPL24_chr1_156732303_156746088	0/0	t0004	233	1	1	0	0	0	0	copy fasta	MRPL24	chr1	156732303	156746088
MRPL24_chr1_156732303_156746088	0/0	t0005	233	1	0	1	0	0	0	copy fasta	MRPL24	chr1	156732303	156746088
MRPL27_chr17_50362867_50378184	1/1	t0001	240	328	51	72	142	16	45	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	t0002	240	29	27	1	0	0	1	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	t0003	240	11	8	3	0	0	0	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	t0004	240	2	2	0	0	0	0	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	t0005	240	1	1	0	0	0	0	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	t0006	240	1	1	0	0	0	0	copy fasta	MRPL27	chr17	50362867	50378184
MRPL28_chr16_361969_375538	0/1	t0001	754	254	59	44	123	8	19	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0002	754	71	5	17	22	6	21	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0003	754	13	13	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0004	754	10	2	4	0	1	3	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	1/0	t0005	754	8	1	4	0	1	1	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0006	754	7	4	3	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0007	754	6	0	0	6	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0008	754	6	6	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0009	754	5	5	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0010	754	4	0	0	0	0	4	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0011	754	3	0	0	3	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0012	754	1	1	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0013	754	1	0	1	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0014	754	1	0	0	1	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0015	754	1	1	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0016	754	1	0	0	1	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0017	754	1	1	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	t0018	754	1	0	1	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL2_chr6_43049029_43064434	1/0	t0001	299	93	10	19	44	7	12	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0002	298	48	20	16	10	1	1	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0003	300	26	12	4	7	0	3	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0004	301	24	4	3	16	1	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0005	299	21	8	4	6	0	3	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0006	301	20	10	1	5	1	3	copy fasta	MRPL2	chr6	43049029	43064434