Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGEF25_chr12_57606435_57622245	0/0	t0013	812	1	0	0	1	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	t0014	812	1	1	0	0	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF26_chr3_154116390_154262825	0/0	t0001	2535	41	7	8	21	2	3	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/1	t0002	2534	37	0	9	17	5	5	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0003	2536	37	1	7	24	1	4	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0004	2536	29	6	6	13	4	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0005	2535	22	6	2	13	0	1	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0006	2536	14	1	1	12	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0007	2536	10	1	3	4	0	2	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0008	2537	8	1	0	5	1	1	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0009	2533	7	3	2	2	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0010	2534	6	1	3	0	0	2	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0011	2535	4	0	2	1	0	1	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0012	2537	4	0	1	2	0	1	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0013	2535	4	2	2	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0014	2533	3	3	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0015	2532	3	3	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0016	2534	3	1	1	1	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0017	2536	3	3	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0018	2537	3	3	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0019	2534	3	1	0	1	0	1	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0020	2536	2	0	1	0	1	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0021	2535	2	1	0	0	0	1	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0022	2535	2	0	2	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0023	2537	2	2	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0024	2535	2	0	0	1	0	1	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0025	2533	2	2	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0026	2534	2	1	0	1	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0027	2535	2	1	0	1	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0028	2536	2	0	1	0	1	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0029	2534	1	0	0	0	0	1	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0030	2533	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0031	2540	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0032	2539	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0033	2535	1	0	0	0	0	1	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0034	2535	1	0	0	1	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0035	2535	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0036	2537	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0037	2537	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0038	2535	1	0	1	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0039	2536	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0040	2533	1	0	0	0	1	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0041	2534	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0042	2534	1	0	1	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0043	2537	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0044	2532	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0045	2538	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0046	2536	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0047	2535	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0048	2537	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825