JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPL2_chr6_43049029_43064434	0/0	t0007	300	19	4	1	14	0	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0008	300	18	2	3	8	0	5	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0009	299	9	9	0	0	0	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0010	299	5	3	2	0	0	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/1	t0011	298	4	1	0	2	0	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0012	302	3	1	2	0	0	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0013	300	2	2	0	0	0	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0014	299	2	0	0	2	0	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0015	298	2	2	0	0	0	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0016	301	1	0	0	0	0	1	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0017	300	1	0	0	0	0	1	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0018	301	1	0	1	0	0	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	t0019	301	1	0	0	0	0	1	copy fasta	MRPL2	chr6	43049029	43064434
MRPL30_chr2_99176184_99204561	0/0	t0001	3951	214	28	43	122	4	17	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	1/1	t0002	3950	130	39	28	33	6	22	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0003	3950	7	6	1	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0004	3951	5	5	0	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0005	3951	5	4	1	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0006	3947	4	0	3	1	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0007	3951	2	0	0	2	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0008	3951	2	2	0	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0009	3951	2	0	1	0	0	1	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0010	3950	2	2	0	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0011	3950	2	2	0	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0012	3951	2	0	0	2	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0013	3951	1	1	0	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0014	3951	1	0	0	1	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0015	3951	1	1	0	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0016	3951	1	1	0	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0017	3951	1	1	0	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0018	3950	1	0	1	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0019	3950	1	1	0	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0020	3950	1	0	0	1	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0021	3951	1	0	0	1	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0022	3951	1	0	0	1	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0023	3950	1	1	0	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0024	3951	1	0	0	1	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	t0025	3951	1	0	0	1	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL32_chr7_42927376_42942857	0/1	t0001	293	311	72	52	137	11	38	copy fasta	MRPL32	chr7	42927376	42942857
MRPL32_chr7_42927376_42942857	0/0	t0002	293	63	15	20	17	4	7	copy fasta	MRPL32	chr7	42927376	42942857
MRPL32_chr7_42927376_42942857	1/0	t0003	293	8	6	1	0	0	0	copy fasta	MRPL32	chr7	42927376	42942857
MRPL32_chr7_42927376_42942857	0/0	t0004	293	7	0	5	0	1	1	copy fasta	MRPL32	chr7	42927376	42942857
MRPL32_chr7_42927376_42942857	0/0	t0005	293	3	3	0	0	0	0	copy fasta	MRPL32	chr7	42927376	42942857
MRPL32_chr7_42927376_42942857	0/0	t0006	293	2	0	0	2	0	0	copy fasta	MRPL32	chr7	42927376	42942857
MRPL33_chr2_27766719_27784733	1/1	t0001	311	387	89	60	185	13	38	copy fasta	MRPL33	chr2	27766719	27784733
MRPL33_chr2_27766719_27784733	0/0	t0002	311	4	0	2	1	1	0	copy fasta	MRPL33	chr2	27766719	27784733
MRPL33_chr2_27766719_27784733	0/0	t0003	311	1	0	0	1	0	0	copy fasta	MRPL33	chr2	27766719	27784733
MRPL33_chr2_27766719_27784733	0/0	t0004	311	1	0	0	1	0	0	copy fasta	MRPL33	chr2	27766719	27784733
MRPL33_chr2_27766719_27784733	0/0	t0005	311	1	1	0	0	0	0	copy fasta	MRPL33	chr2	27766719	27784733
MRPL34_chr19_17300872_17311843	1/1	t0001	486	236	45	53	104	8	24	copy fasta	MRPL34	chr19	17300872	17311843