JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPL34_chr19_17300872_17311843	0/0	t0002	486	77	19	14	21	7	16	copy fasta	MRPL34	chr19	17300872	17311843
MRPL34_chr19_17300872_17311843	0/0	t0003	486	67	29	11	23	3	1	copy fasta	MRPL34	chr19	17300872	17311843
MRPL34_chr19_17300872_17311843	0/0	t0004	486	1	0	0	0	0	1	copy fasta	MRPL34	chr19	17300872	17311843
MRPL34_chr19_17300872_17311843	0/0	t0005	486	1	1	0	0	0	0	copy fasta	MRPL34	chr19	17300872	17311843
MRPL35_chr2_86194457_86218790	0/1	t0001	3157	143	42	24	61	9	6	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0002	3157	138	0	34	85	2	17	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0003	3157	30	0	0	27	0	3	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0004	3157	27	12	2	5	2	6	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0005	3157	11	0	0	10	0	1	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0006	3157	9	9	0	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0007	3157	8	6	2	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0008	3157	7	5	2	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0009	3157	6	0	0	6	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0010	3157	5	5	0	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0011	3157	4	3	1	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0012	3155	3	3	0	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0013	3157	3	0	3	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0014	3153	3	0	1	0	0	2	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0015	3157	3	0	2	0	1	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0016	3157	2	2	0	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0017	3157	2	0	0	2	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0018	3157	2	0	0	2	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0019	3157	2	0	2	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0020	3157	2	0	0	2	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0021	3157	1	0	0	1	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	1/0	t0022	3157	1	0	0	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0023	3157	1	1	0	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0024	3157	1	1	0	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0025	3157	1	1	0	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0026	3157	1	0	0	0	0	1	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0027	3157	1	0	0	0	0	1	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0028	3157	1	0	0	0	0	1	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0029	3157	1	0	0	1	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0030	3157	1	0	0	1	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0031	3157	1	1	0	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0032	3157	1	0	1	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0033	3157	1	1	0	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	t0034	3157	1	0	0	1	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL36_chr5_1793385_1804837	1/1	t0001	298	421	87	78	190	18	46	copy fasta	MRPL36	chr5	1793385	1804837
MRPL36_chr5_1793385_1804837	0/0	t0002	298	4	4	0	0	0	0	copy fasta	MRPL36	chr5	1793385	1804837
MRPL36_chr5_1793385_1804837	0/0	t0003	298	3	2	1	0	0	0	copy fasta	MRPL36	chr5	1793385	1804837
MRPL36_chr5_1793385_1804837	0/0	t0004	298	2	0	0	0	0	2	copy fasta	MRPL36	chr5	1793385	1804837
MRPL36_chr5_1793385_1804837	0/0	t0005	298	1	1	0	0	0	0	copy fasta	MRPL36	chr5	1793385	1804837
MRPL36_chr5_1793385_1804837	0/0	t0006	298	1	0	1	0	0	0	copy fasta	MRPL36	chr5	1793385	1804837
MRPL37_chr1_54195167_54223383	1/1	t0001	212	318	82	67	121	10	36	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	t0002	212	111	12	17	68	2	12	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	t0003	212	1	0	0	1	0	0	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	t0004	212	1	0	0	1	0	0	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	t0005	212	1	0	0	1	0	0	copy fasta	MRPL37	chr1	54195167	54223383
MRPL38_chr17_75893644_75909884	1/1	t0001	216	263	76	49	98	9	29	copy fasta	MRPL38	chr17	75893644	75909884