JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPL38_chr17_75893644_75909884	0/0	t0002	216	83	16	11	41	7	8	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	t0003	216	5	5	0	0	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	t0004	216	1	0	0	0	0	1	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	t0005	216	1	0	0	1	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	t0006	216	1	1	0	0	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL39_chr21_25580656_25612481	1/1	t0001	58	400	94	70	188	12	34	copy fasta	MRPL39	chr21	25580656	25612481
MRPL3_chr3_131457212_131507971	1/1	t0001	662	366	83	65	162	13	41	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	t0002	662	12	0	2	9	1	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	t0003	662	4	4	0	0	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	t0004	669	3	2	1	0	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	t0005	662	2	2	0	0	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	t0006	662	1	1	0	0	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	t0007	662	1	0	0	0	0	1	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	t0008	662	1	0	0	1	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL40_chr22_19427545_19441075	1/1	t0001	124	428	90	78	208	8	42	copy fasta	MRPL40	chr22	19427545	19441075
MRPL41_chr9_137546879_137557555	1/1	t0001	169	397	87	74	174	12	48	copy fasta	MRPL41	chr9	137546879	137557555
MRPL41_chr9_137546879_137557555	0/0	t0002	169	6	6	0	0	0	0	copy fasta	MRPL41	chr9	137546879	137557555
MRPL41_chr9_137546879_137557555	0/0	t0003	169	2	0	0	2	0	0	copy fasta	MRPL41	chr9	137546879	137557555
MRPL41_chr9_137546879_137557555	0/0	t0004	169	1	0	0	1	0	0	copy fasta	MRPL41	chr9	137546879	137557555
MRPL41_chr9_137546879_137557555	0/0	t0005	169	1	0	0	1	0	0	copy fasta	MRPL41	chr9	137546879	137557555
MRPL41_chr9_137546879_137557555	0/0	t0006	169	1	1	0	0	0	0	copy fasta	MRPL41	chr9	137546879	137557555
MRPL42_chr12_93462514_93521214	0/0	t0001	15376	34	1	8	21	1	3	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0002	15128	32	2	8	18	2	2	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0003	15128	20	0	0	17	1	2	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0004	15128	15	0	2	11	2	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0005	15373	9	0	0	6	0	3	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0006	15129	7	4	2	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0007	15129	7	0	2	3	0	2	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0008	15376	6	0	6	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0009	15127	6	0	0	6	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0010	15377	5	0	1	4	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0011	15125	5	0	3	0	1	1	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	1/0	t0012	15129	5	2	0	1	0	1	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0013	15135	4	4	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0014	15134	4	0	2	0	2	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0015	15377	4	1	0	3	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0016	15126	4	0	0	3	0	1	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0017	15127	4	0	0	4	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0018	15129	4	0	1	2	0	1	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0019	15126	4	4	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0020	15129	4	0	4	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0021	15376	3	0	0	3	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0022	15128	3	2	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0023	15131	3	3	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0024	15128	3	3	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0025	15127	3	0	1	2	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0026	15129	3	0	0	1	0	2	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0027	15126	3	3	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0028	15130	2	0	0	2	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0029	15129	2	0	2	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214