JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPL42_chr12_93462514_93521214	0/0	t0030	15128	2	0	0	2	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0031	15127	2	0	1	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0032	15128	2	0	0	2	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0033	15126	2	0	0	2	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0034	15131	2	0	2	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0035	15133	2	0	1	0	1	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0036	15377	2	0	1	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0037	15550	2	0	1	0	0	1	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0038	15131	2	0	0	2	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0039	15124	2	0	0	0	0	2	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0040	15128	2	2	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0041	15128	2	0	2	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0042	15128	2	0	0	2	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0043	15127	2	0	0	1	0	1	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0044	15129	2	0	0	2	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0045	15126	2	0	0	2	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0046	15129	2	0	0	2	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0047	15126	2	2	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0048	15127	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0049	15127	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0050	15128	1	0	0	0	1	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0051	15129	1	0	1	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0052	15128	1	0	0	0	1	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0053	15129	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0054	15133	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0055	15131	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0056	15131	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0057	15124	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0058	15135	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0059	15137	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0060	15133	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0061	15139	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0062	15142	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0063	15139	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0064	15140	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0065	15141	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0066	15136	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0067	15135	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0068	15135	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0069	15136	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0070	15136	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0071	15137	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0072	15138	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0073	15109	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0074	15137	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0075	15137	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0076	15139	1	0	1	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0077	15133	1	0	1	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0078	15133	1	0	0	0	0	1	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0079	15137	1	0	1	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214