JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPL42_chr12_93462514_93521214	0/0	t0130	15124	1	0	0	0	1	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0131	15125	1	0	1	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0132	15129	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0133	15130	1	0	1	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0134	15127	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0135	15127	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0136	15127	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0137	15128	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0138	15129	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0139	15132	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0140	15132	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0141	15124	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0142	15128	1	0	1	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0143	15133	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0144	15127	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0145	15127	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0146	15128	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0147	15126	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0148	15127	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0149	15128	1	0	1	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0150	15128	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0151	15125	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0152	15127	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0153	15126	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0154	15127	1	0	1	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0155	15127	1	0	0	0	0	1	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0156	15128	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0157	15130	1	0	1	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0158	15130	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0159	15129	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0160	15128	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0161	15129	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0162	15129	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0163	15100	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0164	15128	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0165	15128	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0166	15128	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0167	15128	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0168	15129	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0169	15129	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0170	15127	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0171	15128	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0172	15128	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0173	15128	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0174	15131	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0175	15130	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0176	15129	1	0	1	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0177	15129	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0178	15129	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0179	15129	1	0	0	0	0	1	copy fasta	MRPL42	chr12	93462514	93521214