JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPL42_chr12_93462514_93521214	0/0	t0180	15127	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0181	15125	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0182	15127	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0183	15127	1	0	1	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0184	15127	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0185	15128	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0186	15130	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0187	15128	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0188	15138	1	1	0	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0189	15377	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0190	15128	1	0	1	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	t0191	15130	1	0	1	0	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL43_chr10_100981269_100992497	1/1	t0001	520	307	76	45	148	10	26	copy fasta	MRPL43	chr10	100981269	100992497
MRPL43_chr10_100981269_100992497	0/0	t0002	520	68	12	27	9	6	14	copy fasta	MRPL43	chr10	100981269	100992497
MRPL43_chr10_100981269_100992497	0/0	t0003	520	3	0	0	3	0	0	copy fasta	MRPL43	chr10	100981269	100992497
MRPL43_chr10_100981269_100992497	0/0	t0004	520	1	0	1	0	0	0	copy fasta	MRPL43	chr10	100981269	100992497
MRPL43_chr10_100981269_100992497	0/0	t0005	520	1	0	1	0	0	0	copy fasta	MRPL43	chr10	100981269	100992497
MRPL44_chr2_223952463_223972714	0/1	t0001	691	286	47	49	151	15	23	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	t0002	691	103	12	23	46	1	21	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	t0003	691	20	19	0	0	0	1	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	t0004	691	4	4	0	0	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	t0005	691	3	3	0	0	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	t0006	691	2	2	0	0	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	t0007	691	1	0	0	0	0	1	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	t0008	691	1	1	0	0	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	t0009	654	1	0	0	1	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	t0010	691	1	1	0	0	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	t0011	691	1	1	0	0	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	1/0	t0012	691	1	0	0	0	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL45_chr17_38292168_38328211	0/1	t0001	633	276	83	52	109	8	23	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	t0002	633	8	8	0	0	0	0	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	t0003	633	1	0	0	0	0	1	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	t0004	633	1	1	0	0	0	0	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	t0005	633	1	0	0	1	0	0	copy fasta	MRPL45	chr17	38292168	38328211
MRPL46_chr15_88454478_88472388	1/1	t0001	147	291	97	58	90	12	32	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	t0002	147	1	1	0	0	0	0	copy fasta	MRPL46	chr15	88454478	88472388
MRPL47_chr3_179583285_179609638	1/1	t0001	602	338	83	67	139	10	37	copy fasta	MRPL47	chr3	179583285	179609638
MRPL47_chr3_179583285_179609638	0/0	t0002	602	30	0	3	26	0	1	copy fasta	MRPL47	chr3	179583285	179609638
MRPL47_chr3_179583285_179609638	0/0	t0003	600	12	0	0	12	0	0	copy fasta	MRPL47	chr3	179583285	179609638
MRPL47_chr3_179583285_179609638	0/0	t0004	602	5	5	0	0	0	0	copy fasta	MRPL47	chr3	179583285	179609638
MRPL47_chr3_179583285_179609638	0/0	t0005	602	1	0	0	1	0	0	copy fasta	MRPL47	chr3	179583285	179609638
MRPL47_chr3_179583285_179609638	0/0	t0006	602	1	1	0	0	0	0	copy fasta	MRPL47	chr3	179583285	179609638
MRPL47_chr3_179583285_179609638	0/0	t0007	602	1	1	0	0	0	0	copy fasta	MRPL47	chr3	179583285	179609638
MRPL48_chr11_73782874_73870133	0/0	t0001	862	185	64	25	71	4	21	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	1/1	t0002	862	107	11	26	49	3	16	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	t0003	862	31	9	7	10	3	2	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	t0004	862	4	3	1	0	0	0	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	t0005	862	2	2	0	0	0	0	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	t0006	862	1	0	0	0	0	1	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	t0007	862	1	1	0	0	0	0	copy fasta	MRPL48	chr11	73782874	73870133