JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPL48_chr11_73782874_73870133	0/0	t0008	862	1	1	0	0	0	0	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	t0009	862	1	1	0	0	0	0	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	t0010	862	1	0	1	0	0	0	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	t0011	862	1	0	0	0	0	1	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	t0012	862	1	0	0	0	0	1	copy fasta	MRPL48	chr11	73782874	73870133
MRPL49_chr11_65117321_65132371	1/1	t0001	1526	344	71	64	156	13	38	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0002	1526	12	0	3	6	1	2	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0003	1526	10	8	2	0	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0004	1526	10	10	0	0	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0005	1526	4	3	1	0	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0006	1526	3	0	1	0	2	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0007	1526	2	0	0	2	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0008	1526	2	2	0	0	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0009	1526	2	2	0	0	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0010	1526	2	2	0	0	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0011	1526	1	0	0	1	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0012	1526	1	0	0	1	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0013	1526	1	0	0	1	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0014	1526	1	0	0	1	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0015	1526	1	0	1	0	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0016	1526	1	0	0	0	0	1	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	t0017	1526	1	0	0	0	0	1	copy fasta	MRPL49	chr11	65117321	65132371
MRPL4_chr19_10247214_10265055	1/1	t0001	283	174	19	29	94	4	26	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	t0002	283	100	18	19	50	4	9	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	t0003	283	71	36	10	19	3	3	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	t0004	283	59	14	15	18	4	8	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	t0005	283	6	0	5	0	1	0	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	t0006	283	3	0	0	3	0	0	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	t0007	283	1	0	0	0	0	1	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	t0008	283	1	1	0	0	0	0	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	t0009	283	1	0	0	0	0	1	copy fasta	MRPL4	chr19	10247214	10265055
MRPL50_chr9_101382633_101403618	0/0	t0001	2845	128	40	18	56	2	12	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	1/0	t0002	2860	120	9	18	82	3	7	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/1	t0003	2855	91	7	24	43	6	10	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0004	2845	27	0	4	17	0	6	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0005	2859	24	7	7	6	1	3	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0006	2845	14	2	1	6	0	5	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0007	2860	12	3	4	0	4	1	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0008	2845	7	7	0	0	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0009	2860	6	6	0	0	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0010	2845	4	2	1	1	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0011	2859	4	4	0	0	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0012	2845	3	0	0	3	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0013	2860	2	0	0	2	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0014	2860	2	0	1	1	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0015	2860	2	2	0	0	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0016	2859	2	0	1	0	0	1	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0017	2845	2	2	0	0	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0018	2845	2	0	2	0	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0019	2845	1	0	0	1	0	0	copy fasta	MRPL50	chr9	101382633	101403618