JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPL50_chr9_101382633_101403618	0/0	t0020	2860	1	0	0	1	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0021	2845	1	1	0	0	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0022	2845	1	1	0	0	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0023	2855	1	0	0	0	1	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0024	2860	1	0	0	1	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0025	2855	1	0	0	1	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0026	2860	1	0	1	0	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0027	2855	1	0	0	0	1	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0028	2845	1	0	0	1	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0029	2859	1	0	0	0	0	1	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	t0030	2855	1	1	0	0	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL51_chr12_6486886_6498262	1/1	t0001	512	252	27	35	153	7	28	copy fasta	MRPL51	chr12	6486886	6498262
MRPL51_chr12_6486886_6498262	0/0	t0002	512	141	49	33	46	2	11	copy fasta	MRPL51	chr12	6486886	6498262
MRPL51_chr12_6486886_6498262	0/0	t0003	512	19	1	7	2	3	6	copy fasta	MRPL51	chr12	6486886	6498262
MRPL51_chr12_6486886_6498262	0/0	t0004	512	14	12	2	0	0	0	copy fasta	MRPL51	chr12	6486886	6498262
MRPL51_chr12_6486886_6498262	0/0	t0005	512	6	5	1	0	0	0	copy fasta	MRPL51	chr12	6486886	6498262
MRPL51_chr12_6486886_6498262	0/0	t0006	512	1	0	0	0	0	1	copy fasta	MRPL51	chr12	6486886	6498262
MRPL51_chr12_6486886_6498262	0/0	t0007	512	1	1	0	0	0	0	copy fasta	MRPL51	chr12	6486886	6498262
MRPL51_chr12_6486886_6498262	0/0	t0008	512	1	1	0	0	0	0	copy fasta	MRPL51	chr12	6486886	6498262
MRPL51_chr12_6486886_6498262	0/0	t0009	512	1	0	0	1	0	0	copy fasta	MRPL51	chr12	6486886	6498262
MRPL52_chr14_22824887_22840037	0/1	t0001	742	160	17	37	78	8	19	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/0	t0002	743	134	45	15	58	2	14	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/0	t0003	743	109	9	19	73	1	7	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	1/0	t0004	743	40	18	10	1	4	6	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/0	t0005	743	4	3	1	0	0	0	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/0	t0006	743	3	0	2	0	1	0	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/0	t0007	743	2	2	0	0	0	0	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/0	t0008	743	1	1	0	0	0	0	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/0	t0009	742	1	1	0	0	0	0	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/0	t0010	742	1	0	0	1	0	0	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/0	t0011	742	1	1	0	0	0	0	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/0	t0012	743	1	1	0	0	0	0	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/0	t0013	733	1	0	0	1	0	0	copy fasta	MRPL52	chr14	22824887	22840037
MRPL53_chr2_74466982_74477680	1/1	t0001	158	383	96	69	168	16	32	copy fasta	MRPL53	chr2	74466982	74477680
MRPL53_chr2_74466982_74477680	0/0	t0002	158	1	0	1	0	0	0	copy fasta	MRPL53	chr2	74466982	74477680
MRPL54_chr19_3757682_3772565	0/0	t0001	192	255	43	44	131	12	25	copy fasta	MRPL54	chr19	3757682	3772565
MRPL54_chr19_3757682_3772565	1/1	t0002	192	179	53	36	59	6	23	copy fasta	MRPL54	chr19	3757682	3772565
MRPL55_chr1_228101685_228114299	1/1	t0001	352	399	93	71	182	12	39	copy fasta	MRPL55	chr1	228101685	228114299
MRPL55_chr1_228101685_228114299	0/0	t0002	352	3	0	0	0	0	3	copy fasta	MRPL55	chr1	228101685	228114299
MRPL55_chr1_228101685_228114299	0/0	t0003	352	1	1	0	0	0	0	copy fasta	MRPL55	chr1	228101685	228114299
MRPL55_chr1_228101685_228114299	0/0	t0004	352	1	0	1	0	0	0	copy fasta	MRPL55	chr1	228101685	228114299
MRPL57_chr13_21171658_21184084	0/0	t0001	1926	307	51	50	156	13	37	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0002	1925	33	23	7	0	1	2	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0003	1926	22	0	7	15	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/1	t0004	1926	9	0	6	0	0	2	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	1/0	t0005	1925	4	3	0	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0006	1926	4	4	0	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0007	1926	4	0	0	0	2	2	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0008	1926	3	3	0	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0009	1926	2	2	0	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084