JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPL57_chr13_21171658_21184084	0/0	t0010	1926	2	0	2	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0011	1926	2	2	0	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0012	1926	2	0	0	2	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0013	1926	2	0	0	2	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0014	1925	1	0	1	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0015	1926	1	1	0	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0016	1926	1	1	0	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0017	1926	1	0	1	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0018	1926	1	1	0	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0019	2059	1	0	0	1	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0020	1926	1	0	0	1	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0021	1926	1	1	0	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0022	1926	1	0	1	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0023	1926	1	0	0	1	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0024	1926	1	1	0	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0025	1926	1	1	0	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0026	1926	1	1	0	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0027	1926	1	0	0	0	0	1	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0028	1926	1	1	0	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	t0029	1926	1	0	1	0	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL58_chr17_75007670_75026261	1/1	t0001	274	383	95	72	156	12	46	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	t0002	274	2	0	0	0	2	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	t0003	274	2	0	0	0	2	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	t0004	274	1	1	0	0	0	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL9_chr1_151754647_151768496	1/1	t0001	421	435	96	82	193	18	44	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	t0002	421	1	0	0	1	0	0	copy fasta	MRPL9	chr1	151754647	151768496
MRPS10_chr6_42201807_42222861	0/0	t0001	1496	235	15	46	134	10	30	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/1	t0002	1495	44	34	3	0	1	5	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0003	1495	38	0	10	27	1	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	1/0	t0004	1495	37	7	7	12	4	6	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0005	1491	11	11	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0006	1491	6	6	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0007	1491	5	5	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0008	1495	3	3	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0009	1496	3	3	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0010	1495	3	0	1	1	0	1	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0011	1496	2	1	1	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0012	1491	2	2	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0013	1495	2	2	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0014	1496	2	0	2	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0015	1496	2	2	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0016	1495	1	1	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0017	1495	1	1	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0018	1496	1	1	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0019	1495	1	0	0	0	0	1	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0020	1495	1	0	0	1	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0021	1495	1	1	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0022	1496	1	1	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0023	1496	1	0	0	0	0	1	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	t0024	1496	1	0	0	1	0	0	copy fasta	MRPS10	chr6	42201807	42222861