Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGEF26_chr3_154116390_154262825	0/0	t0049	2535	1	0	0	0	0	1	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0050	2537	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0051	2524	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	t0052	2536	1	0	1	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF28_chr5_73621196_73946990	1/0	t0001	1116	85	34	14	25	3	8	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/1	t0002	1116	57	12	10	20	4	10	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	t0003	1116	11	2	8	0	1	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	t0004	1116	10	3	2	2	1	2	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	t0005	1116	9	8	1	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	t0006	1116	6	0	1	2	0	3	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	t0007	1116	5	0	0	1	1	3	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	t0008	1116	2	2	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	t0009	1116	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	t0010	1116	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	t0011	1116	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF2_chr1_155941854_155983547	1/1	t0001	1209	272	87	48	96	9	30	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	t0002	1209	7	1	2	0	2	2	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	t0003	1209	1	0	0	0	0	1	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	t0004	1209	1	0	0	0	0	1	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	t0005	1209	1	0	0	0	1	0	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	t0006	1209	1	0	0	1	0	0	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	t0007	1209	1	0	0	1	0	0	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF33_chr2_38884875_38980454	0/0	t0001	1882	130	17	26	64	3	20	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	1/0	t0002	1882	68	24	15	16	0	12	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0003	1882	23	23	0	0	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0004	1882	19	11	1	7	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0005	1882	11	1	7	0	1	2	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0006	1880	10	0	2	8	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0007	1884	4	0	4	0	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0008	1882	2	1	0	0	0	1	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0009	1882	2	2	0	0	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0010	1882	1	1	0	0	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0011	1882	1	1	0	0	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0012	1884	1	0	1	0	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0013	1882	1	0	0	1	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0014	1880	1	0	0	1	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0015	1882	1	0	0	1	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0016	1882	1	1	0	0	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/1	t0017	1882	1	0	0	0	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	t0018	1882	1	0	0	0	0	1	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF35_chr7_144181083_144200833	0/0	t0001	1155	231	9	41	149	4	28	copy fasta	ARHGEF35	chr7	144181083	144200833
ARHGEF35_chr7_144181083_144200833	1/0	t0002	1155	97	23	21	35	4	13	copy fasta	ARHGEF35	chr7	144181083	144200833
ARHGEF35_chr7_144181083_144200833	0/0	t0003	1155	23	18	2	0	1	2	copy fasta	ARHGEF35	chr7	144181083	144200833
ARHGEF35_chr7_144181083_144200833	0/0	t0004	1154	8	7	1	0	0	0	copy fasta	ARHGEF35	chr7	144181083	144200833
ARHGEF35_chr7_144181083_144200833	0/0	t0005	1155	3	3	0	0	0	0	copy fasta	ARHGEF35	chr7	144181083	144200833
ARHGEF35_chr7_144181083_144200833	0/0	t0006	1155	3	0	3	0	0	0	copy fasta	ARHGEF35	chr7	144181083	144200833
ARHGEF35_chr7_144181083_144200833	0/0	t0007	1155	2	0	0	2	0	0	copy fasta	ARHGEF35	chr7	144181083	144200833
ARHGEF35_chr7_144181083_144200833	0/0	t0008	1154	2	1	0	1	0	0	copy fasta	ARHGEF35	chr7	144181083	144200833
ARHGEF35_chr7_144181083_144200833	0/0	t0009	1155	2	2	0	0	0	0	copy fasta	ARHGEF35	chr7	144181083	144200833
ARHGEF35_chr7_144181083_144200833	0/0	t0010	1155	2	0	0	2	0	0	copy fasta	ARHGEF35	chr7	144181083	144200833