JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPS11_chr15_88462708_88485776	1/1	t0001	2808	184	64	40	45	11	22	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0002	2808	15	15	0	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0003	2808	12	3	1	6	1	1	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0004	2808	4	3	0	1	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0005	2808	3	1	2	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0006	2808	3	1	2	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0007	2808	2	0	2	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0008	2808	2	0	0	0	0	2	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0009	2808	1	1	0	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0010	2808	1	0	1	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0011	2808	1	1	0	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0012	2808	1	1	0	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0013	2808	1	1	0	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0014	2808	1	0	0	1	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0015	2808	1	0	0	1	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0016	2808	1	1	0	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0017	2808	1	0	1	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0018	2808	1	0	0	1	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0019	2808	1	0	0	1	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0020	2808	1	0	1	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0021	2808	1	0	0	1	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0022	2808	1	0	0	1	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0023	2808	1	0	0	0	0	1	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0024	2808	1	1	0	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0025	2808	1	1	0	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0026	2808	1	1	0	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	t0027	2808	1	1	0	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS12_chr19_38925944_38938168	1/1	t0001	543	389	71	77	177	14	48	copy fasta	MRPS12	chr19	38925944	38938168
MRPS12_chr19_38925944_38938168	0/0	t0002	543	25	24	0	1	0	0	copy fasta	MRPS12	chr19	38925944	38938168
MRPS12_chr19_38925944_38938168	0/0	t0003	543	2	0	0	2	0	0	copy fasta	MRPS12	chr19	38925944	38938168
MRPS12_chr19_38925944_38938168	0/0	t0004	543	1	1	0	0	0	0	copy fasta	MRPS12	chr19	38925944	38938168
MRPS12_chr19_38925944_38938168	0/0	t0005	543	1	0	1	0	0	0	copy fasta	MRPS12	chr19	38925944	38938168
MRPS14_chr1_175007958_175028425	1/0	t0001	1729	200	19	41	109	7	23	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/1	t0002	1729	68	5	4	48	2	8	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0003	1729	58	10	16	17	8	7	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0004	1729	40	39	1	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0005	1729	10	8	2	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0006	1729	4	1	1	0	1	1	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0007	1729	2	2	0	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0008	1729	2	2	0	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0009	1729	2	2	0	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0010	1733	2	2	0	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0011	1729	2	0	2	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0012	1729	1	0	1	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0013	1729	1	1	0	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0014	1729	1	0	1	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0015	1729	1	0	0	0	0	1	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0016	1729	1	1	0	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0017	1729	1	0	1	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	t0018	1729	1	1	0	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425