JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPS14_chr1_175007958_175028425	0/0	t0019	1733	1	1	0	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS15_chr1_36450718_36469384	1/1	t0001	180	322	89	39	147	13	32	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	t0002	180	104	10	25	56	5	8	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	t0003	180	1	1	0	0	0	0	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	t0004	180	1	0	0	1	0	0	copy fasta	MRPS15	chr1	36450718	36469384
MRPS16_chr10_73243849_73257644	1/1	t0001	2166	196	56	22	89	2	25	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0002	2164	84	12	6	58	0	8	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0003	2167	17	0	0	17	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0004	2162	11	9	2	0	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0005	2165	5	0	1	4	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0006	2166	4	1	0	0	0	3	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0007	2164	3	0	0	3	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0008	2164	3	2	1	0	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0009	2165	3	1	2	0	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0010	2162	2	2	0	0	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0011	2166	2	0	0	2	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0012	2162	1	1	0	0	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0013	2166	1	0	1	0	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0014	2164	1	0	0	1	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0015	2165	1	0	0	1	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0016	2166	1	0	0	1	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0017	2166	1	0	0	0	0	1	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0018	2166	1	0	0	0	0	1	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0019	2166	1	1	0	0	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0020	2166	1	0	0	1	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0021	2166	1	0	1	0	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0022	2166	1	1	0	0	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0023	2165	1	1	0	0	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0024	2167	1	0	0	1	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	t0025	2165	1	1	0	0	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS17_chr7_55946877_55961500	0/0	t0001	1393	202	62	19	94	9	18	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/1	t0002	1394	70	4	6	55	0	4	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0003	1393	49	2	21	10	5	11	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0004	1394	32	3	12	10	4	3	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0005	1393	22	13	2	6	0	1	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0006	1394	17	1	3	13	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0007	1395	7	3	2	1	0	1	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	1/0	t0008	1394	5	0	2	2	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0009	1392	4	2	1	1	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0010	1393	3	0	0	3	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0011	1393	2	2	0	0	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0012	1394	2	1	0	1	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0013	1395	2	0	0	0	0	2	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0014	1393	1	0	0	0	0	1	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0015	1393	1	1	0	0	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0016	1395	1	0	0	0	0	1	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0017	1395	1	0	0	1	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0018	1394	1	1	0	0	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0019	1394	1	1	0	0	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	t0020	1393	1	0	0	1	0	0	copy fasta	MRPS17	chr7	55946877	55961500