JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPS18A_chr6_43666202_43692791	1/1	t0001	573	359	74	49	180	13	41	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18A_chr6_43666202_43692791	0/0	t0002	573	8	8	0	0	0	0	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18A_chr6_43666202_43692791	0/0	t0003	573	7	7	0	0	0	0	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18A_chr6_43666202_43692791	0/0	t0004	573	2	0	1	0	1	0	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18A_chr6_43666202_43692791	0/0	t0005	573	1	1	0	0	0	0	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18A_chr6_43666202_43692791	0/0	t0006	573	1	0	0	0	1	0	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18A_chr6_43666202_43692791	0/0	t0007	573	1	0	0	0	0	1	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18A_chr6_43666202_43692791	0/0	t0008	573	1	0	0	0	1	0	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18B_chr6_30612840_30631392	0/1	t0001	622	335	75	70	136	14	39	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	t0002	623	55	7	11	26	4	7	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	t0003	623	21	7	2	12	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	t0004	622	3	0	0	3	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	t0005	622	3	0	0	3	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	t0006	622	2	2	0	0	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	t0007	622	1	1	0	0	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	t0008	622	1	0	0	1	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	t0009	622	1	0	0	1	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	t0010	622	1	0	1	0	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18C_chr4_83451058_83467298	0/1	t0001	1121	175	12	35	107	4	16	copy fasta	MRPS18C	chr4	83451058	83467298
MRPS18C_chr4_83451058_83467298	0/0	t0002	1122	131	16	25	63	9	18	copy fasta	MRPS18C	chr4	83451058	83467298
MRPS18C_chr4_83451058_83467298	0/0	t0003	1122	58	55	3	0	0	0	copy fasta	MRPS18C	chr4	83451058	83467298
MRPS18C_chr4_83451058_83467298	0/0	t0004	1122	24	12	7	0	2	3	copy fasta	MRPS18C	chr4	83451058	83467298
MRPS18C_chr4_83451058_83467298	0/0	t0005	1121	2	0	0	0	1	1	copy fasta	MRPS18C	chr4	83451058	83467298
MRPS18C_chr4_83451058_83467298	1/0	t0006	1122	1	0	0	0	0	0	copy fasta	MRPS18C	chr4	83451058	83467298
MRPS18C_chr4_83451058_83467298	0/0	t0007	1122	1	0	0	1	0	0	copy fasta	MRPS18C	chr4	83451058	83467298
MRPS18C_chr4_83451058_83467298	0/0	t0008	1121	1	1	0	0	0	0	copy fasta	MRPS18C	chr4	83451058	83467298
MRPS18C_chr4_83451058_83467298	0/0	t0009	1121	1	0	0	1	0	0	copy fasta	MRPS18C	chr4	83451058	83467298
MRPS21_chr1_150288861_150313979	0/0	t0001	823	198	33	33	99	7	26	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	0/0	t0002	823	80	2	17	43	3	15	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	0/1	t0003	823	50	37	8	0	2	2	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	0/0	t0004	823	29	0	8	21	0	0	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	0/0	t0005	823	11	11	0	0	0	0	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	0/0	t0006	823	11	10	1	0	0	0	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	0/0	t0007	821	4	0	3	0	0	1	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	0/0	t0008	823	1	0	0	1	0	0	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	0/0	t0009	823	1	1	0	0	0	0	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	1/0	t0010	822	1	0	0	0	0	0	copy fasta	MRPS21	chr1	150288861	150313979
MRPS22_chr3_139339020_139362129	1/1	t0001	123	243	77	46	97	5	16	copy fasta	MRPS22	chr3	139339020	139362129
MRPS22_chr3_139339020_139362129	0/0	t0002	123	47	5	12	6	6	18	copy fasta	MRPS22	chr3	139339020	139362129
MRPS22_chr3_139339020_139362129	0/0	t0003	123	20	4	6	7	1	2	copy fasta	MRPS22	chr3	139339020	139362129
MRPS23_chr17_57829781_57855044	0/0	t0001	5038	75	3	15	47	4	6	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0002	5039	39	1	4	33	0	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0003	5034	37	8	4	22	2	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0004	5043	27	5	13	5	1	3	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0005	5044	18	4	8	2	1	3	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0006	5034	11	0	0	11	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0007	5040	9	0	2	6	0	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0008	5047	8	0	3	4	0	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0009	5035	7	2	0	4	0	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0010	5045	6	3	1	2	0	0	copy fasta	MRPS23	chr17	57829781	57855044