JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPS23_chr17_57829781_57855044	0/0	t0011	5033	5	0	3	0	1	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0012	5036	5	5	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	1/0	t0013	5037	5	4	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0014	5032	4	3	1	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0015	5045	4	0	0	2	0	2	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0016	5046	4	0	2	0	1	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0017	5035	4	0	1	3	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0018	5033	4	4	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0019	5034	4	0	4	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0020	5038	3	0	0	0	0	3	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0021	5041	3	3	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0022	5040	3	0	0	2	0	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0023	5039	3	0	0	2	0	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0024	5045	3	0	0	3	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0025	5030	2	2	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0026	5039	2	0	0	0	0	2	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0027	5038	2	0	1	0	1	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0028	5049	2	0	1	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0029	5022	2	2	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0030	5043	2	2	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0031	5045	2	2	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0032	5037	2	0	1	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0033	5030	2	2	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0034	5034	2	0	0	2	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0035	5035	2	0	0	0	0	2	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0036	5038	2	2	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0037	5043	2	0	1	0	1	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0038	5046	2	0	0	2	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0039	5017	2	0	0	0	0	2	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0040	5016	2	0	2	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0041	5022	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0042	5033	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0043	5033	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0044	5036	1	0	1	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0045	5038	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0046	5039	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0047	5041	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0048	5058	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0049	5062	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0050	5036	1	0	0	0	0	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0051	5040	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0052	5040	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0053	5043	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0054	5044	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0055	5045	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0056	5046	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0057	5045	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0058	5047	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0059	5047	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0060	5046	1	0	0	0	1	0	copy fasta	MRPS23	chr17	57829781	57855044