JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPS23_chr17_57829781_57855044	0/0	t0061	5033	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0062	5041	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0063	5043	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0064	5042	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0065	5046	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/1	t0066	5050	1	0	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0067	5037	1	0	1	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0068	5036	1	0	1	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0069	5037	1	0	0	0	0	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0070	5039	1	0	1	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0071	5038	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0072	5037	1	0	1	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0073	5037	1	0	0	0	0	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0074	5036	1	0	1	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0075	5038	1	0	0	0	0	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0076	5038	1	0	0	0	1	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0077	5038	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0078	5038	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0079	5039	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0080	5038	1	0	1	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0081	5039	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0082	5041	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0083	5040	1	0	0	0	0	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0084	5040	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0085	5038	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0086	5035	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0087	5034	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0088	5035	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0089	5033	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0090	5034	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0091	5034	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0092	5035	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0093	5036	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0094	5034	1	0	0	0	0	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0095	5034	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0096	5032	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0097	5035	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0098	5038	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0099	5039	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0100	5044	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0101	5035	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0102	5036	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0103	5037	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0104	5037	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0105	5038	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0106	5037	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0107	5038	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0108	5055	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0109	5060	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0110	5037	1	0	1	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044