JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPS23_chr17_57829781_57855044	0/0	t0111	5042	1	0	1	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0112	5038	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	t0113	5038	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS24_chr7_43861558_43874517	1/1	t0001	164	429	95	80	196	18	38	copy fasta	MRPS24	chr7	43861558	43874517
MRPS24_chr7_43861558_43874517	0/0	t0002	164	1	1	0	0	0	0	copy fasta	MRPS24	chr7	43861558	43874517
MRPS25_chr3_15043512_15070315	1/1	t0001	4051	194	32	31	94	6	29	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0002	4051	59	6	14	25	3	11	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0003	4051	28	0	4	19	0	5	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0004	4051	11	10	1	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0005	4051	11	11	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0006	4051	10	3	3	0	3	1	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0007	4051	8	8	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0008	4051	7	0	7	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0009	4051	4	4	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0010	4051	4	4	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0011	4051	3	2	1	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0012	4051	3	3	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0013	4051	2	0	0	2	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0014	4051	2	2	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0015	4051	2	0	2	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0016	4051	2	0	0	2	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0017	4051	2	2	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0018	4051	2	2	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0019	4051	2	0	0	0	0	2	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0020	4051	1	0	1	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0021	4051	1	0	0	1	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0022	4051	1	0	1	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0023	4051	1	0	0	1	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0024	4051	1	1	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0025	4051	1	1	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0026	4051	1	1	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0027	4051	1	1	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0028	4051	1	0	0	0	0	1	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0029	4051	1	1	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0030	4051	1	0	1	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	t0031	4051	1	0	0	0	0	1	copy fasta	MRPS25	chr3	15043512	15070315
MRPS26_chr20_3041052_3053250	1/1	t0001	399	327	73	54	146	13	39	copy fasta	MRPS26	chr20	3041052	3053250
MRPS26_chr20_3041052_3053250	0/0	t0002	399	72	0	7	60	2	3	copy fasta	MRPS26	chr20	3041052	3053250
MRPS26_chr20_3041052_3053250	0/0	t0003	399	35	15	9	0	3	8	copy fasta	MRPS26	chr20	3041052	3053250
MRPS26_chr20_3041052_3053250	0/0	t0004	399	3	3	0	0	0	0	copy fasta	MRPS26	chr20	3041052	3053250
MRPS26_chr20_3041052_3053250	0/0	t0005	399	1	1	0	0	0	0	copy fasta	MRPS26	chr20	3041052	3053250
MRPS27_chr5_72214403_72325240	1/1	t0001	1526	175	34	34	88	4	13	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	t0002	1526	155	34	36	52	8	25	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	t0003	1527	8	8	0	0	0	0	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	t0004	1526	2	0	0	2	0	0	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	t0005	1526	2	2	0	0	0	0	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	t0006	1526	1	0	0	1	0	0	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	t0007	1526	1	1	0	0	0	0	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	t0008	1526	1	0	0	1	0	0	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	t0009	1526	1	1	0	0	0	0	copy fasta	MRPS27	chr5	72214403	72325240