JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPS28_chr8_79913717_80035259	1/1	t0001	275	290	77	60	113	10	28	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	t0002	275	4	4	0	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	t0003	275	3	3	0	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	t0004	275	1	1	0	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	t0005	275	1	1	0	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	t0006	275	1	0	0	1	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS2_chr9_135495682_135509671	0/0	t0001	568	232	41	31	131	7	22	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	1/0	t0002	568	91	10	30	23	11	16	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	t0003	568	62	35	9	9	0	9	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	t0004	566	5	4	1	0	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	t0005	568	5	5	0	0	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	t0006	568	3	3	0	0	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	t0007	568	3	0	0	0	0	3	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	t0008	568	1	0	1	0	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	t0009	568	1	0	0	1	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	t0010	566	1	1	0	0	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/1	t0011	568	1	0	0	0	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	t0012	566	1	1	0	0	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS30_chr5_44803947_44820514	1/1	t0001	329	388	82	76	170	14	44	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	t0002	329	3	3	0	0	0	0	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	t0003	329	2	2	0	0	0	0	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	t0004	329	1	1	0	0	0	0	copy fasta	MRPS30	chr5	44803947	44820514
MRPS31_chr13_40724128_40776190	1/1	t0001	299	402	88	61	199	14	38	copy fasta	MRPS31	chr13	40724128	40776190
MRPS31_chr13_40724128_40776190	0/0	t0002	299	1	0	1	0	0	0	copy fasta	MRPS31	chr13	40724128	40776190
MRPS31_chr13_40724128_40776190	0/0	t0003	299	1	0	0	1	0	0	copy fasta	MRPS31	chr13	40724128	40776190
MRPS33_chr7_140997610_141019952	0/1	t0001	3890	157	27	37	64	11	17	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0002	3890	42	7	13	13	0	9	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0003	3886	22	1	4	12	0	5	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0004	3889	17	0	1	16	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0005	3890	15	12	1	2	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0006	3890	11	10	1	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0007	3890	9	9	0	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0008	3890	8	8	0	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0009	3890	8	0	0	8	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	1/0	t0010	3890	7	0	2	0	3	1	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0011	3890	5	4	1	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0012	3889	4	0	0	4	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0013	3890	3	2	1	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0014	3890	2	2	0	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0015	3890	2	0	2	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0016	3890	2	0	1	0	0	1	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0017	3890	2	0	0	2	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0018	3890	2	0	0	0	0	2	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0019	3890	2	0	0	0	1	1	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0020	3886	1	0	0	0	0	1	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0021	3890	1	0	1	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0022	3890	1	0	0	1	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0023	3890	1	1	0	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0024	3886	1	1	0	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0025	3890	1	1	0	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952