JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPS33_chr7_140997610_141019952	0/0	t0026	3890	1	0	0	1	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0027	3890	1	0	0	1	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0028	3890	1	0	0	0	1	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0029	3890	1	1	0	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0030	3890	1	0	0	0	0	1	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0031	3890	1	1	0	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0032	3889	1	0	0	1	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0033	3890	1	1	0	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0034	3890	1	1	0	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0035	3890	1	1	0	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0036	3886	1	0	0	1	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0037	3886	1	0	0	1	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0038	3886	1	0	0	1	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	t0039	3886	1	0	1	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS34_chr16_1766895_1778134	1/0	t0001	342	354	93	70	130	17	43	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/1	t0002	342	77	2	7	63	1	3	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/0	t0003	342	2	0	0	0	0	2	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/0	t0004	342	1	0	0	1	0	0	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/0	t0005	342	1	1	0	0	0	0	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/0	t0006	342	1	0	1	0	0	0	copy fasta	MRPS34	chr16	1766895	1778134
MRPS35_chr12_27705832_27761295	1/1	t0001	858	264	48	50	129	9	26	copy fasta	MRPS35	chr12	27705832	27761295
MRPS35_chr12_27705832_27761295	0/0	t0002	858	58	0	9	40	3	6	copy fasta	MRPS35	chr12	27705832	27761295
MRPS35_chr12_27705832_27761295	0/0	t0003	858	32	30	2	0	0	0	copy fasta	MRPS35	chr12	27705832	27761295
MRPS35_chr12_27705832_27761295	0/0	t0004	858	2	0	0	2	0	0	copy fasta	MRPS35	chr12	27705832	27761295
MRPS35_chr12_27705832_27761295	0/0	t0005	858	1	0	1	0	0	0	copy fasta	MRPS35	chr12	27705832	27761295
MRPS35_chr12_27705832_27761295	0/0	t0006	858	1	0	0	1	0	0	copy fasta	MRPS35	chr12	27705832	27761295
MRPS36_chr5_69212760_69235158	0/1	t0001	1004	302	75	49	137	7	33	copy fasta	MRPS36	chr5	69212760	69235158
MRPS36_chr5_69212760_69235158	0/0	t0002	1004	103	13	25	49	5	11	copy fasta	MRPS36	chr5	69212760	69235158
MRPS36_chr5_69212760_69235158	0/0	t0003	1004	2	2	0	0	0	0	copy fasta	MRPS36	chr5	69212760	69235158
MRPS36_chr5_69212760_69235158	0/0	t0004	1004	1	0	0	1	0	0	copy fasta	MRPS36	chr5	69212760	69235158
MRPS36_chr5_69212760_69235158	0/0	t0005	1004	1	0	0	1	0	0	copy fasta	MRPS36	chr5	69212760	69235158
MRPS5_chr2_95080369_95126808	1/1	t0001	2006	276	60	50	120	8	36	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	t0002	2006	5	5	0	0	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	t0003	2006	3	2	1	0	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	t0004	2006	1	1	0	0	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	t0005	2006	1	1	0	0	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	t0006	2006	1	0	1	0	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	t0007	2006	1	0	1	0	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	t0008	2006	1	1	0	0	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	t0009	1985	1	0	1	0	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS6_chr21_34068578_34148030	0/0	t0001	554	215	70	47	75	5	18	copy fasta	MRPS6	chr21	34068578	34148030
MRPS6_chr21_34068578_34148030	1/1	t0002	554	60	3	16	29	3	7	copy fasta	MRPS6	chr21	34068578	34148030
MRPS6_chr21_34068578_34148030	0/0	t0003	554	9	8	1	0	0	0	copy fasta	MRPS6	chr21	34068578	34148030
MRPS6_chr21_34068578_34148030	0/0	t0004	554	6	2	0	0	0	4	copy fasta	MRPS6	chr21	34068578	34148030
MRPS6_chr21_34068578_34148030	0/0	t0005	554	2	0	0	2	0	0	copy fasta	MRPS6	chr21	34068578	34148030
MRPS6_chr21_34068578_34148030	0/0	t0006	554	2	0	1	0	0	1	copy fasta	MRPS6	chr21	34068578	34148030
MRPS6_chr21_34068578_34148030	0/0	t0007	554	1	1	0	0	0	0	copy fasta	MRPS6	chr21	34068578	34148030
MRPS6_chr21_34068578_34148030	0/0	t0008	554	1	0	1	0	0	0	copy fasta	MRPS6	chr21	34068578	34148030
MRPS7_chr17_75256879_75271376	0/1	t0001	476	309	67	61	121	15	44	copy fasta	MRPS7	chr17	75256879	75271376
MRPS7_chr17_75256879_75271376	1/0	t0002	476	30	23	4	0	1	1	copy fasta	MRPS7	chr17	75256879	75271376